PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG034560.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 174aa MW: 18415.1 Da PI: 9.4366

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG034560.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	21.2	5e-07	64	86	1	23
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gC l Y rGA +VRC+ C+ TRIDC7BG034560.2 64 CNGCFSLVLYNRGAANVRCSRCN 86 **********************9 PP
2	zf-LSD1	39.6	8.4e-13	102	126	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrt+L+YP+GA+ V Ca C++V TRIDC7BG034560.2 102 CGGCRTTLMYPPGASTVGCATCHHV 126 ************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence
PSSLSSLISL ATYFFHLPLS PTHLSLSASA IGASRLLGSL LGMPRCTSSV NYQTETAAMS 60 ELICNGCFSL VLYNRGAANV RCSRCNMLNS TRSASQYAHL KCGGCRTTLM YPPGASTVGC 120 ATCHHVNPVR AQGSSAPPDA HARPQTVLVE NPRTMNDKGK LVSNVAVGVT SWKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.1	1e-25	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG034560.2