PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG048400.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 283aa MW: 29576.6 Da PI: 10.0858

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG048400.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.7e-07	19	43	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H TRIDC7BG048400.5 19 KSKPCTKFFSTAGCPFGSSCHFLHN 43 7789********************7 PP
2	zf-CCCH	24.1	6.4e-08	85	110	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck G++C+FaHg+ TRIDC7BG048400.5 85 KTRLCNKFNTAEGCKWGNKCHFAHGE 110 9***********************96 PP
3	zf-CCCH	37.5	3.8e-12	249	274	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC7BG048400.5 249 FKTKLCDNFNK-GSCTFGDRCHFAHGE 274 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
CRQARQRESE SVQTGVGSKS KPCTKFFSTA GCPFGSSCHF LHNFPGGHQA VSKMTNLGGP 60 AVSAPQGRMP MGPGVPDGPP TPSLKTRLCN KFNTAEGCKW GNKCHFAHGE RELGKPMLLN 120 NSMAPPMGPR PNGHFQPPPM PGPDMVPPST FGASATAKIS VDASLAGAII GKGGVNTKHI 180 SRMTGAKLAI RDNEADPNHK NIELEGSFDQ VNHASAMVKE LILRIGGNAP PQAKNPGRGP 240 AGGGGGSNFK TKLCDNFNKG SCTFGDRCHF AHGESELRKS AAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	4e-55	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG048400.5