PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG068920.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-X1

Protein Properties

Length: 817aa MW: 88343.2 Da PI: 7.9695

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG068920.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	21.5	5e-07	77	94	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H Cq CH+GpC++C TRIDC7BG068920.4 77 CGNHACQDVCHPGPCGEC 94 ****************** PP
2	zf-NF-X1	21	7.2e-07	135	152	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C+ CHeG+CppC TRIDC7BG068920.4 135 CGVHRCKVACHEGECPPC 152 ****************** PP

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence
VTCGQRCEKL LPCRRHRCEK VCHTGPCGDC EVNFPAQCFC GKKTETLLCG EMVLKGKLSD 60 KDGVFSCSEV CSHNLACGNH ACQDVCHPGP CGECELLPGK VTTCHCGKTR LQEKRASCLD 120 PIPTCDKVCD KRLPCGVHRC KVACHEGECP PCLVRVEQRC RCGSSGQMVE CYKVLKEEFR 180 CNKPCGRKKN CGRHRCSELC CPLSKPFAQH QGDSMDPHFC QIPCGKKLRC GQHGCQHLCH 240 SGHCDPCRET IFHDLTCACG RTSIPPPQPC GTPTPSCPHQ CMVPQPCGHP ASHQCHFGDC 300 PPCVVPVTRE CVGGHVMLRN IPCGSKDIRC NQPCGKNRQC GLHACARTCH PAPCDPPPAN 360 GEASSSSGGK VSCGQLCGVP RRECKHTCNA PCHPSSPCPD VRCEHRVTIA CSCGRITTAV 420 PCSAGGAYNG DSAFDISVMQ QLPMPLQPVE SNGKRVPVGQ RKLCCDEECA KMERKRVLAE 480 AFDITPPNLD ALHFGENSNA SDLLSDLFRR EPKWVLAIEE RCKFLVLGKT KGNSSSNIKF 540 HVFCHMMKDK RDAIRLIADR WKLSVQGVGW EPKRFITVHV TPKSKVPARV LGSKPGVPVS 600 ASHPYFDPMV DMDPRLVVAM LDLPRDADVS SLVLRFGGEC ELVWLNDKNA AAVFSDPARA 660 ATALRRLDYG SAYQGAAMFC PSSITQASVS SNVWVGAQRD GGLAAKSSAN PWKASQFEPD 720 PSGDWTVLSH ASGSVWKRGD TPAQVMGSSN RWNALESDAA TSSGPTDKRK PPLRTETGSS 780 SSAPRVGAGS SAAPSAGQSV SKLQPDVEVE DWEESCE

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence

VTCGQRCEKL LPCRRHRCEK VCHTGPCGDC EVNFPAQCFC GKKTETLLCG EMVLKGKLSD  60
KDGVFSCSEV CSHNLACGNH ACQDVCHPGP CGECELLPGK VTTCHCGKTR LQEKRASCLD  120
PIPTCDKVCD KRLPCGVHRC KVACHEGECP PCLVRVEQRC RCGSSGQMVE CYKVLKEEFR  180
CNKPCGRKKN CGRHRCSELC CPLSKPFAQH QGDSMDPHFC QIPCGKKLRC GQHGCQHLCH  240
SGHCDPCRET IFHDLTCACG RTSIPPPQPC GTPTPSCPHQ CMVPQPCGHP ASHQCHFGDC  300
PPCVVPVTRE CVGGHVMLRN IPCGSKDIRC NQPCGKNRQC GLHACARTCH PAPCDPPPAN  360
GEASSSSGGK VSCGQLCGVP RRECKHTCNA PCHPSSPCPD VRCEHRVTIA CSCGRITTAV  420
PCSAGGAYNG DSAFDISVMQ QLPMPLQPVE SNGKRVPVGQ RKLCCDEECA KMERKRVLAE  480
AFDITPPNLD ALHFGENSNA SDLLSDLFRR EPKWVLAIEE RCKFLVLGKT KGNSSSNIKF  540
HVFCHMMKDK RDAIRLIADR WKLSVQGVGW EPKRFITVHV TPKSKVPARV LGSKPGVPVS  600
ASHPYFDPMV DMDPRLVVAM LDLPRDADVS SLVLRFGGEC ELVWLNDKNA AAVFSDPARA  660
ATALRRLDYG SAYQGAAMFC PSSITQASVS SNVWVGAQRD GGLAAKSSAN PWKASQFEPD  720
PSGDWTVLSH ASGSVWKRGD TPAQVMGSSN RWNALESDAA TSSGPTDKRK PPLRTETGSS  780
SSAPRVGAGS SAAPSAGQSV SKLQPDVEVE DWEESCE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG068920.4