PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019149685.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 276aa    MW: 30826.8 Da    PI: 9.9497
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019149685.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.7e-114488147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I + +   +t  q++s+ qky
   XP_019149685.1 44 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVA-SKTVIQIRSHAQKY 88
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MALQNTGSFS KQTPAVAANS NAPSLSDDDP TKKVRKPYTI SKSRESWTEP EHDKFLEALQ  60
LFDRDWKKIE AFVASKTVIQ IRSHAQKYFQ KVQKSGTNEH LPPPRPKRKA AHPYPQKASK  120
SGASQVPTSV QGPAALPDAE MARNSVFLPI IRATSASLPS RTDNSMQAGD LESTDRPLTD  180
THCWSSNKNS SAELTNKRAH GNSLRVLPDF NEVYNFIGSI FDPNVSGHLQ KLKKMDRIDV  240
ETVLLLMRNL TINLMNPDFE NHKKLLSSYE VDGKEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.13e-85MYB_related family protein