PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019149708.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 423aa MW: 46816.2 Da PI: 6.6791

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019149708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.1	1.2e-19	33	80	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lvd++++ G g+W+++++ g++R++k+c++rw +yl XP_019149708.1 33 KGPWTPEEDEKLVDYIRKNGHGSWRAVPKLAGLNRCGKSCRLRWTNYL 80 79********************************************97 PP
2	Myb_DNA-binding	57.6	2.9e-18	86	131	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++l+++++ lG++ W++Ia +++ gRt++++k++w+++l XP_019149708.1 86 RGKFSEEEEQLIIKLHSVLGNK-WSAIAMRLP-GRTDNEIKNHWNTHL 131 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MQVVASTMRR PSSPTLSGSS GGRGDENGGG VKKGPWTPEE DEKLVDYIRK NGHGSWRAVP 60 KLAGLNRCGK SCRLRWTNYL RPDIKRGKFS EEEEQLIIKL HSVLGNKWSA IAMRLPGRTD 120 NEIKNHWNTH LRKRLLQMGI DPVTHRPRTD FNFIDALANL PQLLVAAANM GNNSNVANPL 180 WDSINALRLC SDAAQLANEL QLLQNFMALQ LQLRGSVNNT TNEAQNQIPE LATQFGSWNQ 240 LLDHLALLNP QLQGGLCNPG SSYNFSRLPP NISGSGSVAT SSTSQNSEIQ IHHPGIISNE 300 TNQRQTTNSN VSRINDDSNK LMTNAFTVSS SSSLNVPSGE DIPSNPIFPA LIPASPFPEN 360 PSSSIDWETD KEKYTISANL KHDIPNHVPN ATTTFEAWRD IKVDDDEATD SYWQDILYQT 420 FSP

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MQVVASTMRR PSSPTLSGSS GGRGDENGGG VKKGPWTPEE DEKLVDYIRK NGHGSWRAVP  60
KLAGLNRCGK SCRLRWTNYL RPDIKRGKFS EEEEQLIIKL HSVLGNKWSA IAMRLPGRTD  120
NEIKNHWNTH LRKRLLQMGI DPVTHRPRTD FNFIDALANL PQLLVAAANM GNNSNVANPL  180
WDSINALRLC SDAAQLANEL QLLQNFMALQ LQLRGSVNNT TNEAQNQIPE LATQFGSWNQ  240
LLDHLALLNP QLQGGLCNPG SSYNFSRLPP NISGSGSVAT SSTSQNSEIQ IHHPGIISNE  300
TNQRQTTNSN VSRINDDSNK LMTNAFTVSS SSSLNVPSGE DIPSNPIFPA LIPASPFPEN  360
PSSSIDWETD KEKYTISANL KHDIPNHVPN ATTTFEAWRD IKVDDDEATD SYWQDILYQT  420
FSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	9e-77	MYB family protein