PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019149822.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28661.4 Da    PI: 8.1086
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019149822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.86.8e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+ KKA+E+SvLCda+va+i+fs++gkl++ys+
  XP_019149822.1  9 KRIENKINRQVTFSKRRSGLAKKAHEISVLCDADVALIVFSHRGKLFDYST 59
                    79***********************************************96 PP
2K-box94.81.4e-31851769100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++++ + +++ e+akLk +i+ Lqr+++h++GedL+s++ k+Lq+LeqqL++sl+ iRs++n+ll+++++elqk ek++ +en++L kk++e
  XP_019149822.1  85 NDSESSDNWSLEYAKLKGKIDLLQRNHKHYMGEDLDSMNQKDLQNLEQQLDSSLRLIRSRRNQLLFDSLSELQKTEKAILQENNMLAKKIKE 176
                     5667789**********************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MGRGKVELKR IENKINRQVT FSKRRSGLAK KAHEISVLCD ADVALIVFSH RGKLFDYSTD  60
SCMEMIIDRY ERYSYAEKRM LAETNDSESS DNWSLEYAKL KGKIDLLQRN HKHYMGEDLD  120
SMNQKDLQNL EQQLDSSLRL IRSRRNQLLF DSLSELQKTE KAILQENNML AKKIKEKEKM  180
AAQQAQWEQN QGPSSTSFLS QQPLLPCQNI GYQGERANQT RRNELDLNLD SLYPPCNLDC  240
FTPCANQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.14e-78MIKC_MADS family protein