PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150090.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YC

Protein Properties

Length: 255aa MW: 28220.8 Da PI: 5.5991

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150090.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	175.8	4.3e-55	77	180	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+trtdifdfl XP_019150090.1 77 QLQQFWANQyqdIEHVADFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFL 171 89****9999******************************************************************************* PP NF-YC 93 vdivprdel 101 vdivpr++l XP_019150090.1 172 VDIVPREDL 180 ****987 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MDHQGNGQPP GMGIVTSSGA AMGYGAPSYQ SNQMTVSIPA ASPGAIQSPQ TVGLPTSSAQ 60 LAYQHIQQQQ QQQLQQQLQQ FWANQYQDIE HVADFKNHSL PLARIKKIMK ADEDVRMISA 120 EAPVVFARAC EMFILELTLR AWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL 180 KDEVLASIPR GTLPVGGPTD VPYYYMAPQS ASQVGASGGM YMGKPVDQTL YGQQPRPYMA 240 QTMWPQQQQQ PPSDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	156	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	8e-84	NF-YC family protein