PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150124.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 712aa MW: 80706.3 Da PI: 9.1355

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150124.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.1	2.2e-11	65	118	47	90
FAR1 47 k..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k ++k+rr+r+++r+gC+akl kke++g++ v+++++eHnH+++ XP_019150124.1 65 KpiielnigngSNKKRRRRTSNRVGCRAKLGFKKESNGEFTVSTFVEEHNHSMC 118 266666667678899*************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence
MLPSIGSAAT RRPSARRKKV NRLRASSIYS LLSLSAVTRA PPWPPLTEEA REGRRQGAKR 60 GGSSKPIIEL NIGNGSNKKR RRRTSNRVGC RAKLGFKKES NGEFTVSTFV EEHNHSMCSE 120 GAKLFLRGNR KLSVAQQAFL ANCIKANIGY STGFRLCKEV AGSYENVGAT DMEFHNFKRD 180 LQSYVDVVDG EMIIERFKTK REVCDRFFFD YHLDEENRLA RLFWADPIGR GSFSCYGDVI 240 SFDATYSTNR YSLVFVPFTG VDNHKRCITF AAGLITKEDV ESYSWLLERF IGAMGKPPLC 300 AVTDQDPAMK IAMDQIIPEC RHRYCMWHIM TKVSEKVGPE LAKNEVFRKS LNDIVWNERI 360 SSSDFEVQWQ LLMEEYNLSE HRWFRKLFAE REHWIPAFFS DLPMSGLVRT TSRSEAQNSV 420 YGKFTRPHSS LVQFYIQFES VLETQGHKQA KLDAQCEGYL PEFKTPLALE RDIAKLFTLA 480 IFYDTQPEID AACFYCEVVD IRKDGTDIYY DITGDSTTTY TVHYKPDGCI AFCSCKMFQR 540 MGLICRHMFL VFKGAHLEQL PSQYIMDRWR KHLSCGACRG RHPNEHVPQT RATELWSKIN 600 TCVGLVGEST ARQARMVQVL KELSKEFACD GTNTGTAKGN SAAIAALCGV QPPQSITIKP 660 PAQAKNKGSG KRLKSNREIA IENSAKVGRK CGLCGEYARH NARSCPSRCN MV

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence

MLPSIGSAAT RRPSARRKKV NRLRASSIYS LLSLSAVTRA PPWPPLTEEA REGRRQGAKR  60
GGSSKPIIEL NIGNGSNKKR RRRTSNRVGC RAKLGFKKES NGEFTVSTFV EEHNHSMCSE  120
GAKLFLRGNR KLSVAQQAFL ANCIKANIGY STGFRLCKEV AGSYENVGAT DMEFHNFKRD  180
LQSYVDVVDG EMIIERFKTK REVCDRFFFD YHLDEENRLA RLFWADPIGR GSFSCYGDVI  240
SFDATYSTNR YSLVFVPFTG VDNHKRCITF AAGLITKEDV ESYSWLLERF IGAMGKPPLC  300
AVTDQDPAMK IAMDQIIPEC RHRYCMWHIM TKVSEKVGPE LAKNEVFRKS LNDIVWNERI  360
SSSDFEVQWQ LLMEEYNLSE HRWFRKLFAE REHWIPAFFS DLPMSGLVRT TSRSEAQNSV  420
YGKFTRPHSS LVQFYIQFES VLETQGHKQA KLDAQCEGYL PEFKTPLALE RDIAKLFTLA  480
IFYDTQPEID AACFYCEVVD IRKDGTDIYY DITGDSTTTY TVHYKPDGCI AFCSCKMFQR  540
MGLICRHMFL VFKGAHLEQL PSQYIMDRWR KHLSCGACRG RHPNEHVPQT RATELWSKIN  600
TCVGLVGEST ARQARMVQVL KELSKEFACD GTNTGTAKGN SAAIAALCGV QPPQSITIKP  660
PAQAKNKGSG KRLKSNREIA IENSAKVGRK CGLCGEYARH NARSCPSRCN MV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	83	KKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-80	FAR1 family protein