PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150142.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 250aa MW: 28311.2 Da PI: 7.1867

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150142.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.5e-08	40	62	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +e Cr+f+r G+C G+ C++aH+ XP_019150142.1 40 QEACRRFSR-GQCAKGELCRYAHV 62 689****.***********6 PP
2	zf-CCCH	20.8	6.9e-07	89	108	6	25
-SGGGGTS.--TTTTT-SS-S CS zf-CCCH 6 CrffartG.tCkyGdrCkFaH 25 C+ff+ G C+yG++C+F H XP_019150142.1 89 CQFFLG-GlPCPYGSKCRFLH 108 776666.55************ PP
3	zf-CCCH	30.3	7.2e-10	155	179	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC + ++G C+yG++C++aHg XP_019150142.1 155 KTKLCLMWEKMGSCWYGSTCTYAHG 179 89**********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGDYPDDDDE SRSRQKSRSS EMHHRLPVHT SDGGMRFDAQ EACRRFSRGQ CAKGELCRYA 60 HVIGNVRGTE GERGHWAMSQ RRTERVNFCQ FFLGGLPCPY GSKCRFLHEA SGNQGDSSMC 120 SEFRESSAIC IATNNDERRS KRLNVRQNPN PVWAKTKLCL MWEKMGSCWY GSTCTYAHGN 180 AELRNIDYPN PLDSSRGHDV DTASKNTESG TVQHGKQFLF KWTDVRKVSQ VYADWIDDDD 240 DASGKDGDGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	5e-18	C3H family protein