PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150228.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 400aa MW: 45258.4 Da PI: 8.9687

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150228.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.6	5.1e-24	46	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YA+++GF+vr+s+ kk+ ++g i ++++vCs+eg++e++++ ++k+rr+r++tr+gC a+++ k+++ g+++v+++e+ H+H l XP_019150228.1 46 EFYKKYASKAGFDVRRSSDKKN-KHGVILRKKMVCSREGFKETKNTGpsvsdpSTKARRHRPSTRVGCVARIVFKRDSAGRYVVKTFEEAHTHCL 139 6**************99998.7888***********999889*9*************************************99 PP FAR1 90 a 90 + XP_019150228.1 140 C 140 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MEDDAGGQNC VMDVSPSDNE NWLTGCGSTI KPAKGQLFNN LEDGIEFYKK YASKAGFDVR 60 RSSDKKNKHG VILRKKMVCS REGFKETKNT GPSVSDPSTK ARRHRPSTRV GCVARIVFKR 120 DSAGRYVVKT FEEAHTHCLC EESYKPFLKV NRKLDVGHQQ FITNCSKVNI GASKSIDIYA 180 EMVGGVENVG YSLVFVPFTG VDNHKKCVTF AAALIAREDV DLYCWALRIF KSAMGSTPRI 240 TATNQDPTMK VAIAKEFPET RHRYCMWNIM TKVSDKVSTE MARNEEFRWE LNGVVWNDSA 300 TSEYFEVGWK GVNEKYSLQE NAWLKRLAQG DISKLQPIRK TLEEFKATWC ESGVERGATD 360 KGKRVIMESY YGVPQPEEVT VHPPSTRFKQ QRVGKTNEDC

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MEDDAGGQNC VMDVSPSDNE NWLTGCGSTI KPAKGQLFNN LEDGIEFYKK YASKAGFDVR  60
RSSDKKNKHG VILRKKMVCS REGFKETKNT GPSVSDPSTK ARRHRPSTRV GCVARIVFKR  120
DSAGRYVVKT FEEAHTHCLC EESYKPFLKV NRKLDVGHQQ FITNCSKVNI GASKSIDIYA  180
EMVGGVENVG YSLVFVPFTG VDNHKKCVTF AAALIAREDV DLYCWALRIF KSAMGSTPRI  240
TATNQDPTMK VAIAKEFPET RHRYCMWNIM TKVSDKVSTE MARNEEFRWE LNGVVWNDSA  300
TSEYFEVGWK GVNEKYSLQE NAWLKRLAQG DISKLQPIRK TLEEFKATWC ESGVERGATD  360
KGKRVIMESY YGVPQPEEVT VHPPSTRFKQ QRVGKTNEDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.2	4e-28	FAR1 family protein