PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150229.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 751aa MW: 85897.6 Da PI: 8.3116

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150229.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.2	2.4e-17	64	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn+Y +v F++r s+ r+g+ t+++ vC++eg++++ ++ ++ +r+r+++rtgC a++ k + ++vt++ + XP_019150229.1 64 EFYNHYTAKVRFDTRSSSVVIA-RDGTKTQKQIVCNREGFKNTGAQHchsqssadagegPSRPKRRRVSNRTGCSARIIFKYIGAAGYQVTTFIE 157 6************9998887.8888************999999***999899999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019150229.1 158 KHNHSMS 164 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence
MEEFDRVPSD FQSTNNPSLS PSSSSNGHTL TISPGMTQYW TPHYEDEIKP AVDMIFKTLD 60 VGIEFYNHYT AKVRFDTRSS SVVIARDGTK TQKQIVCNRE GFKNTGAQHC HSQSSADAGE 120 GPSRPKRRRV SNRTGCSARI IFKYIGAAGY QVTTFIEKHN HSMSSVLARQ FLKGNRNISS 180 VHQKFILDCA KENIGASKSH GLYSHIVGDY SEVGATVVDF KNVRRDLRAY ILGADAQILV 240 HNLIKKQEMC PAFAFDYEVD EDEQMSILFW ADPMSKKNFA AFGDVVSFDA TYSKNRYNLA 300 MGIEPRIIVT DQDPAMKVAI PTVFKQARHR YCMWHIMCKV GEKVGPTLNK DEEFRNKLNS 360 IVWTSSLEPP EFEKQWRELM EKYNLVEHNW FTTMFEARKH WIPAYFRDGF MGGLLRTTSR 420 SESENYTYSR FTGPQSSLVE FMMNFDSALK SQRNTNAKLN SDNEGYNPDM KTPLGIEKHA 480 SIVYTITVFY QVQEEICAFC FKCMVLSVRE DGGMLHYDIM DGKNKRFTVV HNVTDHETKC 540 SCKMFEMVGL LCRHIFVVFR DLEKIPLKYV VNRWTKDASL KATFEIDGVI YDQNGPKDEK 600 KMLLNKVRSD IHCCMDLAGK EKLSPQHSRR TVIESYCGST EISEINILPP KHAKNKGSGK 660 RIKSSEELAM EKQEGRMCNF CGVRGDHHDT RTCPLNPKNK DKQKGKKKYF EDISSGSGSI 720 RHITSHPQML NSQPLDVVWK LDDELETEND K

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence

MEEFDRVPSD FQSTNNPSLS PSSSSNGHTL TISPGMTQYW TPHYEDEIKP AVDMIFKTLD  60
VGIEFYNHYT AKVRFDTRSS SVVIARDGTK TQKQIVCNRE GFKNTGAQHC HSQSSADAGE  120
GPSRPKRRRV SNRTGCSARI IFKYIGAAGY QVTTFIEKHN HSMSSVLARQ FLKGNRNISS  180
VHQKFILDCA KENIGASKSH GLYSHIVGDY SEVGATVVDF KNVRRDLRAY ILGADAQILV  240
HNLIKKQEMC PAFAFDYEVD EDEQMSILFW ADPMSKKNFA AFGDVVSFDA TYSKNRYNLA  300
MGIEPRIIVT DQDPAMKVAI PTVFKQARHR YCMWHIMCKV GEKVGPTLNK DEEFRNKLNS  360
IVWTSSLEPP EFEKQWRELM EKYNLVEHNW FTTMFEARKH WIPAYFRDGF MGGLLRTTSR  420
SESENYTYSR FTGPQSSLVE FMMNFDSALK SQRNTNAKLN SDNEGYNPDM KTPLGIEKHA  480
SIVYTITVFY QVQEEICAFC FKCMVLSVRE DGGMLHYDIM DGKNKRFTVV HNVTDHETKC  540
SCKMFEMVGL LCRHIFVVFR DLEKIPLKYV VNRWTKDASL KATFEIDGVI YDQNGPKDEK  600
KMLLNKVRSD IHCCMDLAGK EKLSPQHSRR TVIESYCGST EISEINILPP KHAKNKGSGK  660
RIKSSEELAM EKQEGRMCNF CGVRGDHHDT RTCPLNPKNK DKQKGKKKYF EDISSGSGSI  720
RHITSHPQML NSQPLDVVWK LDDELETEND K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	130	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-79	FAR1 family protein