PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150556.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 344aa MW: 38632.1 Da PI: 6.6668

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150556.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G g+W+t+++ g+ R++k+c++rw +yl XP_019150556.1 13 RGLWSPEEDEKLIKHITTFGHGCWSTVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	49.7	8.6e-16	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++d+++ G++ W+ Ia++++ gRt++++k++w++ XP_019150556.1 66 RGSFTEQEERTIIDVHRIIGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MGHRCCSKQR VKRGLWSPEE DEKLIKHITT FGHGCWSTVP KLAGLQRCGK SCRLRWINYL 60 RPDLRRGSFT EQEERTIIDV HRIIGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL 120 DPNTHNLISP TQAKTTKQNN SHSHTHNHRR HQNSPPSAFT IETSSSSHRD VVPMEIKATL 180 AAAFPPFPTP PNEKLLYHKN TIPLSHERNN NPVMDYGSCS SMEITSSSSN LSGLGILNSD 240 NCMWGGATNL ELLFGGSAEG RQEEGEEDQE EHIQEEMGAG TETQTGGNQV FKVNTDDEFN 300 NNGQSIEINL FDNSNIGIDF VESSLMPCAM YCNANSMDQL PWDC

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MGHRCCSKQR VKRGLWSPEE DEKLIKHITT FGHGCWSTVP KLAGLQRCGK SCRLRWINYL  60
RPDLRRGSFT EQEERTIIDV HRIIGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLISP TQAKTTKQNN SHSHTHNHRR HQNSPPSAFT IETSSSSHRD VVPMEIKATL  180
AAAFPPFPTP PNEKLLYHKN TIPLSHERNN NPVMDYGSCS SMEITSSSSN LSGLGILNSD  240
NCMWGGATNL ELLFGGSAEG RQEEGEEDQE EHIQEEMGAG TETQTGGNQV FKVNTDDEFN  300
NNGQSIEINL FDNSNIGIDF VESSLMPCAM YCNANSMDQL PWDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	5e-81	MYB family protein