PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150676.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 456aa MW: 50549.7 Da PI: 7.8844

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150676.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.1	4.6e-14	28	72	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd++l + ++++G+++W+ Ia+++ +t qc+ rw++yl XP_019150676.1 28 SWSQEEDDILREQIRLHGTENWTIIASKFK-DKTTRQCRRRWFTYL 72 6**************************9.***********97 PP
2	Myb_DNA-binding	42.7	1.3e-13	78	121	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd ll +a + +G++ W+ Ia+ + gRt++ +k+r+ + XP_019150676.1 78 KGGWSPEEDVLLCEAQRIFGNR-WTEIAKVVS-GRTDNAVKNRFTT 121 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MQNMKKKVSN GNGNSNEASK PKERHIVSWS QEEDDILREQ IRLHGTENWT IIASKFKDKT 60 TRQCRRRWFT YLNSDFKKGG WSPEEDVLLC EAQRIFGNRW TEIAKVVSGR TDNAVKNRFT 120 TLCKKRAKNE ALAKENNNSF INLNNKRVIF PGAGSPFKKL RRSHISDLPE NCNSGEKSLV 180 TCNAVNQLQR SPFSVLPNVG SSLPTNQNVS IKDSPTNGTF LKKDDPKILA LMQQAELLSS 240 LALKVNSENS HQSLENAWKV LQDFLNQKED DVLKGRISEM DFKGLAEDLK NINVPSQSWR 300 QPALSEDSAG SSEYSSESTL LSHAPGDKKE QCEAEVSALH QDIESGLQST EIGDRTTINA 360 FSGGTPANAT CTEADILPTC DKVGANEEAA AEECSSPLHV TPLFRTLAAA IPSPKFSESE 420 RQFLLKTLGM DCTSPKSSIN NTSHPPSCKR VLLHSL

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MQNMKKKVSN GNGNSNEASK PKERHIVSWS QEEDDILREQ IRLHGTENWT IIASKFKDKT  60
TRQCRRRWFT YLNSDFKKGG WSPEEDVLLC EAQRIFGNRW TEIAKVVSGR TDNAVKNRFT  120
TLCKKRAKNE ALAKENNNSF INLNNKRVIF PGAGSPFKKL RRSHISDLPE NCNSGEKSLV  180
TCNAVNQLQR SPFSVLPNVG SSLPTNQNVS IKDSPTNGTF LKKDDPKILA LMQQAELLSS  240
LALKVNSENS HQSLENAWKV LQDFLNQKED DVLKGRISEM DFKGLAEDLK NINVPSQSWR  300
QPALSEDSAG SSEYSSESTL LSHAPGDKKE QCEAEVSALH QDIESGLQST EIGDRTTINA  360
FSGGTPANAT CTEADILPTC DKVGANEEAA AEECSSPLHV TPLFRTLAAA IPSPKFSESE  420
RQFLLKTLGM DCTSPKSSIN NTSHPPSCKR VLLHSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	1e-138	MYB family protein