PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019150677.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 320aa    MW: 35926.1 Da    PI: 6.9232
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019150677.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-1898151356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++++eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  XP_019150677.1  98 KKRRLNTEQVKALEKSFEVGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 151
                     56789************************************************9 PP
2HD-ZIP_I/II132.91.2e-4297188192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kkrrl++eqvk+LE+sFe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlE+dye+Lkr++da+k+en++L +++++L+++++
  XP_019150677.1  97 NKKRRLNTEQVKALEKSFEVGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLERDYESLKRQFDAVKAENDALLAHNQKLHAQIM 188
                     59**************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MTSCIGMDFF PTNFMLQTPH HDPNDHHHHQ PSTALSPLFP SCTIPPPPQN FHGVVGGSSF  60
LGGKRSMKCC EEALSHGDVQ EEVSDEEEGS VQAGENNKKR RLNTEQVKAL EKSFEVGNKL  120
EPERKMQLAR ALGLQPRQIA IWFQNRRARW KTKQLERDYE SLKRQFDAVK AENDALLAHN  180
QKLHAQIMGV KNSRCRDSIQ PTESINLNKE TEGSCSNSRS ENSCAEIMKL DIISRSTAAI  240
DSHPTTTTTT TTSSLFPAAG ISMPHLFHNN NSSSSSRHSD LIHHCLKMDP TVKEESLSNM  300
FCGGDDHSGF WPWLDQHHFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146154RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-93HD-ZIP family protein