PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150683.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 605aa MW: 69331.6 Da PI: 7.8916

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.4	1.6e-20	47	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA+ +GF+vrks+ k+ r g i k+++vC++eg+++ + ++ t++++r+r+++r+gC ak++ ++++ gk++v+k+e+ H+H l+ XP_019150683.1 47 YYKTYASVTGFDVRKSSDIKN-RYGIILKNKLVCNREGYKDAKPNTttkqntTTQTKRRRPSNRVGCMAKIVFRRDSMGKYVVKKFEEGHTHCLC 140 8**************9998.7888**********999988899999999999********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence
MEEGEKSQHC VMDESQNGTS IWVTECDPSI KPAVDQVFAT LEDGIAYYKT YASVTGFDVR 60 KSSDIKNRYG IILKNKLVCN REGYKDAKPN TTTKQNTTTQ TKRRRPSNRV GCMAKIVFRR 120 DSMGKYVVKK FEEGHTHCLC EESYKSFLKG NRKLDIGHQQ FIANCSKVNI GASKSHDLYA 180 EMVGGVENVG ATQQDFKNYI REILAYMQGG DAQMLISKYL DLKSDYDDMY FEYEANENDQ 240 LARVFLADGM ARKQYSVFGD VVSFDATYKT NRYSLVFVPF TGIDHHKKCV TFAAALIARE 300 DVDSYYWILK NFRNAMGSTP PLTITDQDPA MKVAIAREFP ETRHRYCMWH IMAKVSDKVS 360 PELAKNEAFR RELNDVIWND SLTTAKFEVA WKGVMEKFGL IENPWLNRMY DERASWIPAC 420 FEGVFMGGLV RTTSRSEAEN RIFKSNTSKH LCVSEFFNRI ESTIRKQRLT QIELNGASIA 480 QTPPYKTQLR IERAAASLYT LTVFYDVQKG ICAGCFDCRV RAVTHGEAGN TYEVEDEQEV 540 RYTVFVEHGT RTTTYECRMY NRIGLLCSHA FAVLIYDRNE DIPPQHITPP VDTNRTNLFT 600 NKNVQ

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence

MEEGEKSQHC VMDESQNGTS IWVTECDPSI KPAVDQVFAT LEDGIAYYKT YASVTGFDVR  60
KSSDIKNRYG IILKNKLVCN REGYKDAKPN TTTKQNTTTQ TKRRRPSNRV GCMAKIVFRR  120
DSMGKYVVKK FEEGHTHCLC EESYKSFLKG NRKLDIGHQQ FIANCSKVNI GASKSHDLYA  180
EMVGGVENVG ATQQDFKNYI REILAYMQGG DAQMLISKYL DLKSDYDDMY FEYEANENDQ  240
LARVFLADGM ARKQYSVFGD VVSFDATYKT NRYSLVFVPF TGIDHHKKCV TFAAALIARE  300
DVDSYYWILK NFRNAMGSTP PLTITDQDPA MKVAIAREFP ETRHRYCMWH IMAKVSDKVS  360
PELAKNEAFR RELNDVIWND SLTTAKFEVA WKGVMEKFGL IENPWLNRMY DERASWIPAC  420
FEGVFMGGLV RTTSRSEAEN RIFKSNTSKH LCVSEFFNRI ESTIRKQRLT QIELNGASIA  480
QTPPYKTQLR IERAAASLYT LTVFYDVQKG ICAGCFDCRV RAVTHGEAGN TYEVEDEQEV  540
RYTVFVEHGT RTTTYECRMY NRIGLLCSHA FAVLIYDRNE DIPPQHITPP VDTNRTNLFT  600
NKNVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-74	FAR1 family protein