PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150697.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 728aa MW: 82043.3 Da PI: 8.3051

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150697.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.6	5.4e-20	35	133	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA+ vGF+vr s+ +++ r+g +k +vCs+eg+++ + + + +r+r+++r+gC+a+l++k+++dg+++v+ +el H XP_019150697.1 35 DFYRQYASLVGFDVRCSSLRRN-REGVAVKDVLVCSREGFKQAVQGSvvvdaaldqaPVAPKRRRVSNRVGCRARLVLKMRDDGVFVVHFIELRH 128 6***************9999.788899***********999***999889999**************************** PP FAR1 86 nHela 90 nH ++ XP_019150697.1 129 NHCFC 133 987 PP

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence
MDVSPDGTKF WTPLCDAAVR PFEGQTFPSL AHGIDFYRQY ASLVGFDVRC SSLRRNREGV 60 AVKDVLVCSR EGFKQAVQGS VVVDAALDQA PVAPKRRRVS NRVGCRARLV LKMRDDGVFV 120 VHFIELRHNH CFCSDVAKPF LRGNRSMDVQ HQIFVLKCAR ANVGPNRSFR LAREFAGSYS 180 NVGATCVDFK NLKRDLMAFI GTSDAHIVVK KYAKKVDDCP DYVFRYDVDS QDQLCRAFWT 240 DPIAKENFSA FGEVVSFDVT YGTNRYGMVL VPFTGVDNHK RGVTFAMGLI SREDVDSYVW 300 LLQQFKSAMG CVPSCTITDQ DPSMRVAVPQ VFDTTRHRFC MWHIMSKVGE KVGNVLSKDE 360 EFRRALNDVV WCETSSVEEF ERGWQDVMEK YSLGDHRWFR LMYDLRSYWI HAYFNDIFMG 420 GLLRTTSRSE AANSVFGSCT NQHASLSELF NNFEGAIDAQ RLAQAKLNAE CEGHFPLCQT 480 PMLIEKHAAA VYTINVFYDV QAEVIAGSFS CRAVRSNVEG LVTRYEVEDD DGLVRTVSFD 540 SGNDGVECTC NMFSRVGLLC RHIFWVFKDR RVVSIPSRYV IARWTRGACV RQVLGVQRGG 600 DSEVDVAIGE AWAEFFSCVT MASRSVDHVT KLNAALKDFN AFLLAENGPT VRASSSKKQL 660 FESFCGASPD GQVNVRPPPI SNNKGGGKRY KSTRELAIEK SGRRQRQCQT CEKYGHNSRT 720 CPMRKVDV

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence

MDVSPDGTKF WTPLCDAAVR PFEGQTFPSL AHGIDFYRQY ASLVGFDVRC SSLRRNREGV  60
AVKDVLVCSR EGFKQAVQGS VVVDAALDQA PVAPKRRRVS NRVGCRARLV LKMRDDGVFV  120
VHFIELRHNH CFCSDVAKPF LRGNRSMDVQ HQIFVLKCAR ANVGPNRSFR LAREFAGSYS  180
NVGATCVDFK NLKRDLMAFI GTSDAHIVVK KYAKKVDDCP DYVFRYDVDS QDQLCRAFWT  240
DPIAKENFSA FGEVVSFDVT YGTNRYGMVL VPFTGVDNHK RGVTFAMGLI SREDVDSYVW  300
LLQQFKSAMG CVPSCTITDQ DPSMRVAVPQ VFDTTRHRFC MWHIMSKVGE KVGNVLSKDE  360
EFRRALNDVV WCETSSVEEF ERGWQDVMEK YSLGDHRWFR LMYDLRSYWI HAYFNDIFMG  420
GLLRTTSRSE AANSVFGSCT NQHASLSELF NNFEGAIDAQ RLAQAKLNAE CEGHFPLCQT  480
PMLIEKHAAA VYTINVFYDV QAEVIAGSFS CRAVRSNVEG LVTRYEVEDD DGLVRTVSFD  540
SGNDGVECTC NMFSRVGLLC RHIFWVFKDR RVVSIPSRYV IARWTRGACV RQVLGVQRGG  600
DSEVDVAIGE AWAEFFSCVT MASRSVDHVT KLNAALKDFN AFLLAENGPT VRASSSKKQL  660
FESFCGASPD GQVNVRPPPI SNNKGGGKRY KSTRELAIEK SGRRQRQCQT CEKYGHNSRT  720
CPMRKVDV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	99	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-90	FAR1 family protein