PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151011.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 709aa MW: 80869.3 Da PI: 7.7643

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151011.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.8	8.8e-19	79	165	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA ++GFs rk k+++ + ++ +++ f+Csk+g+r ++ ++ ++ +tr gC+a+ + +++g+w+vtk ++eHnH+l+ XP_019151011.1 79 IYNDYAFHMGFSARKGKQYYVTGTRILKTKMFCCSKSGFRIMHDIP--NRCYSKIVTRFGCNAMCQFDIDSNGNWVVTKHVKEHNHDLC 165 6******************999999**********99988..788899********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MNEIVVTNRI DEIDSNSKIV DENSSVITGK DDIPVAGECI SPIASDVPYT NSVDDNEYIL 60 DNEELLGLSV GSIEDAFGIY NDYAFHMGFS ARKGKQYYVT GTRILKTKMF CCSKSGFRIM 120 HDIPNRCYSK IVTRFGCNAM CQFDIDSNGN WVVTKHVKEH NHDLCRASSS YMLRLHRKVS 180 KNQLTCLKNM KRSGVPLSDG IRFLKRQSGG SPFVGFTPRD AYNMISSDSA KHLDGTDSNS 240 LIEIFRRRQM DESDFYFEFE LDEDARLCNF FWRDGQMKAD YDLFGDLVVH DTTYRTNRYD 300 MICAPFVGMN HHCMNVMFGC GFLLNERIES FVWLFKVFVR SMGGKHLQTI MTDQCAAMAA 360 AIAQVFSNSN HRLCIWHIGD NSKTHIKSLR NKKGFLELFN FLLKYTDTEA EFEFYWTSVV 420 SEWRSRENGE NVRCSQGLAP MVMNHVKLLS HARDIYTIEI YYRFDEQFVK GTSCHQESVG 480 GSGNEIKYHV WRPDVDLIRH EVCFKVNDLD ISCSCMLFSE MGILCSHSLR IFNVHCVAAI 540 PDKYIIKRWT KKVIEDRIIS RDCSSNIFSI ALSVWVIQMG RKFHQLVLSS QANCKAREVC 600 ENAFEDARRK VECDIGPIII EDGEQRTAGV IQNPARNRAK VERNRRHIST IEKKYNQVRG 660 RKLGVKVAEM CTKAAVQASV EGVVANIVGS GYFVHPSSGS HELGLVKPS

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MNEIVVTNRI DEIDSNSKIV DENSSVITGK DDIPVAGECI SPIASDVPYT NSVDDNEYIL  60
DNEELLGLSV GSIEDAFGIY NDYAFHMGFS ARKGKQYYVT GTRILKTKMF CCSKSGFRIM  120
HDIPNRCYSK IVTRFGCNAM CQFDIDSNGN WVVTKHVKEH NHDLCRASSS YMLRLHRKVS  180
KNQLTCLKNM KRSGVPLSDG IRFLKRQSGG SPFVGFTPRD AYNMISSDSA KHLDGTDSNS  240
LIEIFRRRQM DESDFYFEFE LDEDARLCNF FWRDGQMKAD YDLFGDLVVH DTTYRTNRYD  300
MICAPFVGMN HHCMNVMFGC GFLLNERIES FVWLFKVFVR SMGGKHLQTI MTDQCAAMAA  360
AIAQVFSNSN HRLCIWHIGD NSKTHIKSLR NKKGFLELFN FLLKYTDTEA EFEFYWTSVV  420
SEWRSRENGE NVRCSQGLAP MVMNHVKLLS HARDIYTIEI YYRFDEQFVK GTSCHQESVG  480
GSGNEIKYHV WRPDVDLIRH EVCFKVNDLD ISCSCMLFSE MGILCSHSLR IFNVHCVAAI  540
PDKYIIKRWT KKVIEDRIIS RDCSSNIFSI ALSVWVIQMG RKFHQLVLSS QANCKAREVC  600
ENAFEDARRK VECDIGPIII EDGEQRTAGV IQNPARNRAK VERNRRHIST IEKKYNQVRG  660
RKLGVKVAEM CTKAAVQASV EGVVANIVGS GYFVHPSSGS HELGLVKPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	636	646	RNRAKVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-57	FAR1 family protein