PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151074.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 749aa MW: 86211 Da PI: 8.6

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151074.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49	2e-15	59	153	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA + F+vr+s+ kk+ + g + k++ v s++g++e++ k+ ++++r+r+++r+gC a++++k dg++ v+k+e+ H+H l XP_019151074.1 59 QFYTKYAACTEFDVRRSSDKKN-NYGIVLKKDVVRSRQGFKENRGKEtlgegaCTEKKRRRTTNRVGCGARIVMKIVCDGRYTVHKFEERHTHCL 152 6**************99888.8899***************9*988999999******************************99 PP FAR1 90 a 90 + XP_019151074.1 153 C 153 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence
MVQPDIGVCN VDAPDANERE RDCRMDISPE GTKYWYTECD RSLKPYQGQM FNTLEDGVQF 60 YTKYAACTEF DVRRSSDKKN NYGIVLKKDV VRSRQGFKEN RGKETLGEGA CTEKKRRRTT 120 NRVGCGARIV MKIVCDGRYT VHKFEERHTH CLCEERHKPF MKVNRKLEIA HQEFITNCEK 180 ANVGASKSFD IYAEIVGGPE NVGATQQDFK NYRRELLAYM KWGDVQMVIS NYLEQKTDCA 240 DMYFEYEVNA NDQLARVFWA DGMARKNYGA FGDAVSFDAT YKTNRYHLVF VPFTGVDNHK 300 RCVTFAAALI DKEDVESYSW VLKHFKNAMG TAPPLIITDQ DPAMKVAIAN VFGGSRHRYC 360 MWHIMTKVRE KVGAEMSNNN EFRQALNSVV WNEESTRSEF EIGWETVIAK YNLHGNRWLT 420 RMYEDRAAWV PAFFEDVFMG GLLRTTSRSE AENRIFQGNM NKHLCLVEFF IRFERAVRKQ 480 RKNNLELSAN CIGHTPDYKT PLRIERSAST VYTLTIFYEV QKEISAGCFK CRVRAFTEAE 540 GLKTYVVEDE NEHRYTVIVQ DGSNIACTCR MYQRVGLLCS HVFVVLKDER IDHIPPQHIT 600 PRWTREAVKH SPTDRDADKQ NGNQRLGNSN NEEGQLLNIF HKCLRKAKGR PQKLKEMRLC 660 MEEFDATLGD DDEPEVIASG KRAIMESYCG VVTPKTIEVH PPPVAKTKGS GKRMKSAREA 720 AMTEHHKKKR TCKTCGVADG HNSRTCPRK

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence

MVQPDIGVCN VDAPDANERE RDCRMDISPE GTKYWYTECD RSLKPYQGQM FNTLEDGVQF  60
YTKYAACTEF DVRRSSDKKN NYGIVLKKDV VRSRQGFKEN RGKETLGEGA CTEKKRRRTT  120
NRVGCGARIV MKIVCDGRYT VHKFEERHTH CLCEERHKPF MKVNRKLEIA HQEFITNCEK  180
ANVGASKSFD IYAEIVGGPE NVGATQQDFK NYRRELLAYM KWGDVQMVIS NYLEQKTDCA  240
DMYFEYEVNA NDQLARVFWA DGMARKNYGA FGDAVSFDAT YKTNRYHLVF VPFTGVDNHK  300
RCVTFAAALI DKEDVESYSW VLKHFKNAMG TAPPLIITDQ DPAMKVAIAN VFGGSRHRYC  360
MWHIMTKVRE KVGAEMSNNN EFRQALNSVV WNEESTRSEF EIGWETVIAK YNLHGNRWLT  420
RMYEDRAAWV PAFFEDVFMG GLLRTTSRSE AENRIFQGNM NKHLCLVEFF IRFERAVRKQ  480
RKNNLELSAN CIGHTPDYKT PLRIERSAST VYTLTIFYEV QKEISAGCFK CRVRAFTEAE  540
GLKTYVVEDE NEHRYTVIVQ DGSNIACTCR MYQRVGLLCS HVFVVLKDER IDHIPPQHIT  600
PRWTREAVKH SPTDRDADKQ NGNQRLGNSN NEEGQLLNIF HKCLRKAKGR PQKLKEMRLC  660
MEEFDATLGD DDEPEVIASG KRAIMESYCG VVTPKTIEVH PPPVAKTKGS GKRMKSAREA  720
AMTEHHKKKR TCKTCGVADG HNSRTCPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-87	FAR1 family protein