PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019151098.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 181aa    MW: 20119.6 Da    PI: 8.2159
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019151098.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.51.7e-4112110199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+l+r+C+++C +apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++slvyeAe+r+rdPvyG++g i +lq+++++l+++l 
  XP_019151098.1  12 SCAACKFLKRRCVPNCQFAPYFRSDDPKKFAKVHKVFGASNVSKILNEVPEEQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQRRMAELQNDLL 106
                     6********************************************************************************************98 PP

          DUF260  96 llke 99 
                     l+++
  XP_019151098.1 107 LARA 110
                     8876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MKNHQEPRSS SSCAACKFLK RRCVPNCQFA PYFRSDDPKK FAKVHKVFGA SNVSKILNEV  60
PEEQREDTVN SLVYEAEVRL RDPVYGCIGA IASLQRRMAE LQNDLLLARA RLAFYATANP  120
PTAASSSSSS FNYDHLNANL PSSYLDFPPS GGFSGTYDHH QNSLILDHTG SLNPFGQFPF  180
P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.19e-58LBD family protein