PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019151357.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 269aa    MW: 30452.5 Da    PI: 9.951
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019151357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-091865146
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     r rWT+eE + +  a ++   +   +W ++a++++ g++  ++++r+q 
   XP_019151357.1 18 RTRWTKEENKMFESALAMIDERtpdRWVRVAHMVP-GKSVSDVINRFQE 65
                     78*********************************.***********97 PP
2Myb_DNA-binding39.21.6e-12118162347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r     +t+ q+ s+ qky
   XP_019151357.1 118 PWTEEEHRRFLMGLDKYGKGDWRNISRNYVISKTPTQVASHAQKY 162
                      8*****************************789***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
METLMLPNSS WLMQPGRRTR WTKEENKMFE SALAMIDERT PDRWVRVAHM VPGKSVSDVI  60
NRFQELAADV SNIEAGLVPV PGYLASSFPV ELVDDHRGFA GFRKRGRGCD QERKKGVPWT  120
EEEHRRFLMG LDKYGKGDWR NISRNYVISK TPTQVASHAQ KYFLRQLSGS KDKRRPSIHD  180
ITTFNLADPN NPSEAKKSVS DEKSIRGTLV PKTIAGTPEL ESWNFPDDGV ASMFRAPADS  240
SFVAYPSLQV GYAKFGLEIN PTRYQTLRG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103115RKRGRGCDQERKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-78MYB family protein