PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151623.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-X1

Protein Properties

Length: 864aa MW: 96600.2 Da PI: 8.478

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151623.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	18.9	3.2e-06	282	301	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+HkC++ CHeG+C++Cp+ XP_019151623.1 282 CGRHKCERGCHEGECGKCPL 301 ******************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 864 aa Download sequence
MSSAAAHNSP SSDSDSDGGT NSSDRHSDLS STIFKSYIDL TGGGHQYQHD LIKIQSFLTS 60 SRSGALSCLI CLERIRAVDP TWSCSSRCFA VFHLLCIQSW GVQASNLAAA RAASRAATTN 120 DNSLLWHCPK CRIEYPKYQI PKTYYCFCGK LENPPHDPWV LPHSCGEICG RPLKYNCGHH 180 CLLLCHPGPC PSCPKLVKAK CFCGAVEDMK RCGFKNFSCN GVCKKLLACK THRCNETCHD 240 GECSPCDAKA VYKCQCGKVK MERQCFERDF RCDNPCDKLL GCGRHKCERG CHEGECGKCP 300 LQGKRTCPCG KRVYEGMSCD VAAPVCGATC DKMLSCGFHR CPERCHRGPC IETCRIVVTK 360 ACRCGSLRKQ VPCYQDLTCE RKCLKVRDCE RHACKRRCCD GDCPPCSEMC DRKLRCRNHK 420 CPAPCHRGAC APCPVMVTIS CFCGETYFEV PCGTESEQKP PRCRKLCRMT TLCRHASTSK 480 PHRCHYGACP SCRLICNEEY PCGHNCKLRC HGPIPPPLPE FTLKPKKKKS THQNEPSPGT 540 SCPPCPELVW KSCVGNHIGA ERMMVCSNRA EFACDNLCGN LLKCGNHYCT KVCHAIKLNH 600 SSASEGHGRG EPCEKCTLRC EKERDPTCPH PCPLPCHLGD CRPCKALIKR SCHCGAMVHA 660 FECISYNSLS QKEQVSARSC RGPCHRKLPY CTHLCPETCH PGECPSPDQC SKKVVIRCGC 720 QTLKKEMLCK DVQAMYRLNG CDPKDISKSQ YGLGLLPCNP DCKSKVRVAE AELQLRKPKP 780 PEEKELDAKS NTTKRRRRRD RVQEDRKTSR LKSLITAIWR VLLFVAITVT LLISAYYGYK 840 GLMWLSDRMN EAETQRQGRY TRRI

Sequence ? help Back to Top

Protein Sequence Length: 864 aa Download sequence

MSSAAAHNSP SSDSDSDGGT NSSDRHSDLS STIFKSYIDL TGGGHQYQHD LIKIQSFLTS  60
SRSGALSCLI CLERIRAVDP TWSCSSRCFA VFHLLCIQSW GVQASNLAAA RAASRAATTN  120
DNSLLWHCPK CRIEYPKYQI PKTYYCFCGK LENPPHDPWV LPHSCGEICG RPLKYNCGHH  180
CLLLCHPGPC PSCPKLVKAK CFCGAVEDMK RCGFKNFSCN GVCKKLLACK THRCNETCHD  240
GECSPCDAKA VYKCQCGKVK MERQCFERDF RCDNPCDKLL GCGRHKCERG CHEGECGKCP  300
LQGKRTCPCG KRVYEGMSCD VAAPVCGATC DKMLSCGFHR CPERCHRGPC IETCRIVVTK  360
ACRCGSLRKQ VPCYQDLTCE RKCLKVRDCE RHACKRRCCD GDCPPCSEMC DRKLRCRNHK  420
CPAPCHRGAC APCPVMVTIS CFCGETYFEV PCGTESEQKP PRCRKLCRMT TLCRHASTSK  480
PHRCHYGACP SCRLICNEEY PCGHNCKLRC HGPIPPPLPE FTLKPKKKKS THQNEPSPGT  540
SCPPCPELVW KSCVGNHIGA ERMMVCSNRA EFACDNLCGN LLKCGNHYCT KVCHAIKLNH  600
SSASEGHGRG EPCEKCTLRC EKERDPTCPH PCPLPCHLGD CRPCKALIKR SCHCGAMVHA  660
FECISYNSLS QKEQVSARSC RGPCHRKLPY CTHLCPETCH PGECPSPDQC SKKVVIRCGC  720
QTLKKEMLCK DVQAMYRLNG CDPKDISKSQ YGLGLLPCNP DCKSKVRVAE AELQLRKPKP  780
PEEKELDAKS NTTKRRRRRD RVQEDRKTSR LKSLITAIWR VLLFVAITVT LLISAYYGYK  840
GLMWLSDRMN EAETQRQGRY TRRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	794	799	KRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein