PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019151822.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 203aa    MW: 23195.1 Da    PI: 8.4643
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019151822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.13e-25958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye +
  XP_019151822.1  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58
                    79*********************************************965 PP
2K-box57.36.9e-20851769100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +++++    ++e+  Lk+eie Lqr +R + G + +++++ eL+ Le+ Le  + +iRs K+++++++i+ l++ke  l  +nk L++k++e
  XP_019151822.1  85 ANDNQLLDPKEEIGMLKNEIEVLQRGLRFMYGGGAGTMTVDELHALEKYLEVWMYQIRSAKMDIMFQEIQLLKNKEGILTAANKHLKEKIDE 176
                     55666667799******************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MARGKIQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATQ  60
GTMQGLIEKY LKCTRGADDQ VADEANDNQL LDPKEEIGML KNEIEVLQRG LRFMYGGGAG  120
TMTVDELHAL EKYLEVWMYQ IRSAKMDIMF QEIQLLKNKE GILTAANKHL KEKIDEQCRT  180
ANIAPMLTNI QCPLTIQNKI YQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-83MIKC_MADS family protein