PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019151828.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Whirly
Protein Properties Length: 219aa    MW: 24145.8 Da    PI: 10.1579
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019151828.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly191.99.9e-60441812139
          Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 
                     ++k+kaal+v++++ptf++l+sg lk++r+G ++l++ +a++erkydWekkq falsatev+++++l++ +sceffhdp++ +sn+G+vrk+l+v
  XP_019151828.1  44 IFKGKAALSVEPRLPTFSKLNSGGLKVERKGVIMLTFLPAVGERKYDWEKKQMFALSATEVGTVLNLGPSDSCEFFHDPSMLQSNAGEVRKTLSV 138
                     9********************************************************************************************** PP

          Whirly  97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     + l dGsG+f++lsv n+  k+n++++vPv+ aef+v+r++++
  XP_019151828.1 139 KALGDGSGYFMSLSVVNNTHKTNDRLTVPVTGAEFSVMRTAFN 181
                     ****************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MLKLSKLLGS SLRGFSSQAG MPIAKKYFEA DGTLRKKVFA PYTIFKGKAA LSVEPRLPTF  60
SKLNSGGLKV ERKGVIMLTF LPAVGERKYD WEKKQMFALS ATEVGTVLNL GPSDSCEFFH  120
DPSMLQSNAG EVRKTLSVKA LGDGSGYFMS LSVVNNTHKT NDRLTVPVTG AEFSVMRTAF  180
NFALPHIMGW DQYTNLQQTN TSELPSGNVA QFAKSEWER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-84Whirly family protein