PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151890.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 325aa MW: 36232.1 Da PI: 5.9539

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.1e-16	34	81	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ll d++++ G g+W+t +++ g+ R++k+c++rw +yl XP_019151890.1 34 RGPWTPAEDKLLTDYINKEGEGQWRTLPKMAGLLRCGKSCRLRWMNYL 81 89****************************99**********97 PP
2	Myb_DNA-binding	48.2	2.4e-15	87	132	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg T++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l XP_019151890.1 87 RGHITPDEEDLILRLHGLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 132 6778****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MRTQSSEKGA AAGEAPSKAK GKRTPCCSKV GLKRGPWTPA EDKLLTDYIN KEGEGQWRTL 60 PKMAGLLRCG KSCRLRWMNY LRPTVKRGHI TPDEEDLILR LHGLLGNRWS LIAGRIPGRT 120 DNEIKNYWNT HLSKKLISQG IDPRNHKPLP VNPTNSNHPK NHTPSSSSVP IIKPTPIHVG 180 LSNQDKNVKM NSSTTVNVVG GTTNLQNDQI DQPNSVGGTT ENHQPTGNGD EEFNMDLGDD 240 NEDNVGMDFC PDEDVFSTFF DSLMNEDVFF AAQNNQQPNH HDITPLPSTS ENNNNNNQPL 300 NPFQHMNFPF STEGWVDDDD DDFLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	3e-77	MYB family protein