PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151897.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 324aa MW: 35953.9 Da PI: 6.6461

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151897.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.1e-16	37	84	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ll d++++ G g+W+t +++ g+ R++k+c++rw +yl XP_019151897.1 37 RGPWTPAEDKLLTDYINKEGEGQWRTLPKMAGLLRCGKSCRLRWMNYL 84 89****************************99**********97 PP
2	Myb_DNA-binding	51	3.4e-16	90	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg T++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_019151897.1 90 RGHITPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 135 6778****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MRTQSSTSSE KGAAGASPPA KAKGKQTPCC SKVGLKRGPW TPAEDKLLTD YINKEGEGQW 60 RTLPKMAGLL RCGKSCRLRW MNYLRPTVKR GHITPDEEDL ILRLHRLLGN RWSLIAGRIP 120 GRTDNEIKNY WNTHLTKKLI SQGIDPRNHK PLLINPTNNH PKSHTSSSSV PIIKPTPIHV 180 GLSNQDKTVK MNSSTTVNVV GGTANHQNDQ IDQPNSVGGT TTDHQTTGNG DEGFNMDIGD 240 DNEDNVGMDF CPDEDAFSTF FDSLMNEDVF FAAAQNNQQS NHHDITPLPS TSENNNNNQP 300 LNPFQHMNFP FSTEGWVDDD DFLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-78	MYB family protein