PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151899.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YB

Protein Properties

Length: 931aa MW: 102462 Da PI: 4.6765

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151899.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.8	4.9e-56	30	126	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrflPian+srimkk+lP n+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plkvyl++yre++g XP_019151899.1 30 VREQDRFLPIANISRIMKKALPPNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYLDPLKVYLTRYREMDG 124 59********************************************************************************************9 PP NF-YB 96 ek 97 ++ XP_019151899.1 125 DE 126 85 PP

Sequence ? help Back to Top
Protein Sequence Length: 931 aa Download sequence
MSDGQASSQH PQSPGGGSHE SGEQSPRSNV REQDRFLPIA NISRIMKKAL PPNGKIAKDA 60 KETVQECVSE FISFITSEAS DKCQREKRKT INGDDLLWAM ATLGFEDYLD PLKVYLTRYR 120 EMDGDEYLGV GAQDGVPNPS GDGTMDLNTQ RMFVGEVSVN GLGNEGTGID SAGSIEIVGS 180 NSLLSGVSQG QLITIQPSYA EEKDINHVAL VPRSREEESR TEEEGQFYVS DLVWGKVRSH 240 PWWPGQIFEP SAASQQAVKY FKRDSYLIAY FGDQTFAWNE VSQIKPFRTY FNQMEKQSST 300 ESFCHAVDCS LDEVSRRVEF GLSCSCVPKA VQCKFESQSV ANAGIRAESS QRDGGDKLST 360 VASFAPGALL QCLKSIATSP CCVVDRLGFV VARSQLLAFS RWKGYYELPA VEEFGGLEGS 420 VLDLTDNSSI PTGKRKSTIR GPYRKRKRLS KDNDCLEKNG TLMFGNISSL PDGGKDYMDE 480 SDGQINIISS SNSHKPRDLI SSELKVKRRK KLLPSGTGSN KSSPPRELLK IGERIQRAAV 540 QLGGSTTVIK PGVEFLSLDK VLLNLSLDKV LLNLSLAAKD PTNGYHILAP FTNIFSGLRE 600 FTLETSKLKD QEVLVEKCRG ESSLNYETTE SPAFNVIEDS YWTDRIIQGN LEGQMLYEPE 660 DQNEKIIPVG QLDAVFGLNP GADKQERGGI LMQSEAEDPF GLVDGQQNLE EQAIFEPGTE 720 DEKNIPVGQP DAVVGINADA DNQERDTIIV QSEAEDPSGL VYGQQNLEEQ IIFEHGTEDE 780 KNIPVGINTD ADNQERDTII MQSEHEDPSG SADGGAEEDD CPTALILNFK NLESVPSATD 840 LNKIFSRFGP LDESQTEGMH KTKRGKVVFK RRSDAEIAFN NAGTCSIFGH ALISYRLNYA 900 PRPRKVPVSN RKRKKTPSTE SNDIQSLSGM T

Sequence ? help Back to Top

Protein Sequence Length: 931 aa Download sequence

MSDGQASSQH PQSPGGGSHE SGEQSPRSNV REQDRFLPIA NISRIMKKAL PPNGKIAKDA  60
KETVQECVSE FISFITSEAS DKCQREKRKT INGDDLLWAM ATLGFEDYLD PLKVYLTRYR  120
EMDGDEYLGV GAQDGVPNPS GDGTMDLNTQ RMFVGEVSVN GLGNEGTGID SAGSIEIVGS  180
NSLLSGVSQG QLITIQPSYA EEKDINHVAL VPRSREEESR TEEEGQFYVS DLVWGKVRSH  240
PWWPGQIFEP SAASQQAVKY FKRDSYLIAY FGDQTFAWNE VSQIKPFRTY FNQMEKQSST  300
ESFCHAVDCS LDEVSRRVEF GLSCSCVPKA VQCKFESQSV ANAGIRAESS QRDGGDKLST  360
VASFAPGALL QCLKSIATSP CCVVDRLGFV VARSQLLAFS RWKGYYELPA VEEFGGLEGS  420
VLDLTDNSSI PTGKRKSTIR GPYRKRKRLS KDNDCLEKNG TLMFGNISSL PDGGKDYMDE  480
SDGQINIISS SNSHKPRDLI SSELKVKRRK KLLPSGTGSN KSSPPRELLK IGERIQRAAV  540
QLGGSTTVIK PGVEFLSLDK VLLNLSLDKV LLNLSLAAKD PTNGYHILAP FTNIFSGLRE  600
FTLETSKLKD QEVLVEKCRG ESSLNYETTE SPAFNVIEDS YWTDRIIQGN LEGQMLYEPE  660
DQNEKIIPVG QLDAVFGLNP GADKQERGGI LMQSEAEDPF GLVDGQQNLE EQAIFEPGTE  720
DEKNIPVGQP DAVVGINADA DNQERDTIIV QSEAEDPSGL VYGQQNLEEQ IIFEHGTEDE  780
KNIPVGINTD ADNQERDTII MQSEHEDPSG SADGGAEEDD CPTALILNFK NLESVPSATD  840
LNKIFSRFGP LDESQTEGMH KTKRGKVVFK RRSDAEIAFN NAGTCSIFGH ALISYRLNYA  900
PRPRKVPVSN RKRKKTPSTE SNDIQSLSGM T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	434	448	KRKSTIRGPYRKRKR
2	911	915	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.1	1e-61	NF-YB family protein