PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151959.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 730aa MW: 84554.3 Da PI: 8.671

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.4	1.3e-19	35	127	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAke+GF+vr +++++ r ge+ + + Cs+eg+++e++++ ++++rr+r+++r+gCk +++++k ++g ++v+ +el H+H l+ XP_019151959.1 35 DFYQAYAKEAGFDVRHGSKRRN-RMGEVSIKYMLCSREGYKAERNEAtntaNKRKRRRRVSNRIGCKTRMVMTKCDTGGYKVHAMELCHTHCLC 127 6***************9999.6677999999******99999998999999********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence
MQIQEDGVKY WTPTTQNEKT PYEGQRFETI DIGIDFYQAY AKEAGFDVRH GSKRRNRMGE 60 VSIKYMLCSR EGYKAERNEA TNTANKRKRR RRVSNRIGCK TRMVMTKCDT GGYKVHAMEL 120 CHTHCLCSDK AKPFLKINRQ LDIGHKTFLA HCAKANIGPT KAFRLFKQMV GSFTDLGATC 180 IDFCNFRRDL LAYIAEADAQ MVIEDMFKRK QENPDFYFDY DIDEEAQLSR IFWADAESRR 240 NYACFGDVMS FDATYSTNRY KLVFVPFMGV DNHKRSITFG AGLIAKEDVE SYEWLLKNFK 300 TAMEYAPRCT ITDQDPALKI VVPQTMPTTR HRFCMWHITT KVGEKVGATL WHNADFKMAL 360 NSIIWDETLT TDEFERKWEQ VMKDYNLEEH RWFTQLYEAR ASWIPAYFND IPMGGLLRTT 420 SRSESENNYF GKFTNHHCSL VEFMAQYNSA IGEQRHNQAK LIAENEGSYP ETKTPLSIEK 480 NAATVYTINI FYELQTEIWE ASFTNHIIHK HNVGDICKYK VEDTDGKMFE VTETPQAEEI 540 ECACKKFNRV GILCRHVLLV MKTRGYESIP RKYIVPRWTR DACAHPLHNV LWARRTNIPT 600 SNETTKVANQ LWTEFYNCMG LVNGWPDKMD QMLATLQQLK KYLEKERQQT EDGANNTSVL 660 ERLVGSTKPG DIQIKPPKVA KNKGSGKRLK SNREKAMSKT QKKKERTCNT CGLPGHNSRT 720 CPDKLASDEV

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence

MQIQEDGVKY WTPTTQNEKT PYEGQRFETI DIGIDFYQAY AKEAGFDVRH GSKRRNRMGE  60
VSIKYMLCSR EGYKAERNEA TNTANKRKRR RRVSNRIGCK TRMVMTKCDT GGYKVHAMEL  120
CHTHCLCSDK AKPFLKINRQ LDIGHKTFLA HCAKANIGPT KAFRLFKQMV GSFTDLGATC  180
IDFCNFRRDL LAYIAEADAQ MVIEDMFKRK QENPDFYFDY DIDEEAQLSR IFWADAESRR  240
NYACFGDVMS FDATYSTNRY KLVFVPFMGV DNHKRSITFG AGLIAKEDVE SYEWLLKNFK  300
TAMEYAPRCT ITDQDPALKI VVPQTMPTTR HRFCMWHITT KVGEKVGATL WHNADFKMAL  360
NSIIWDETLT TDEFERKWEQ VMKDYNLEEH RWFTQLYEAR ASWIPAYFND IPMGGLLRTT  420
SRSESENNYF GKFTNHHCSL VEFMAQYNSA IGEQRHNQAK LIAENEGSYP ETKTPLSIEK  480
NAATVYTINI FYELQTEIWE ASFTNHIIHK HNVGDICKYK VEDTDGKMFE VTETPQAEEI  540
ECACKKFNRV GILCRHVLLV MKTRGYESIP RKYIVPRWTR DACAHPLHNV LWARRTNIPT  600
SNETTKVANQ LWTEFYNCMG LVNGWPDKMD QMLATLQQLK KYLEKERQQT EDGANNTSVL  660
ERLVGSTKPG DIQIKPPKVA KNKGSGKRLK SNREKAMSKT QKKKERTCNT CGLPGHNSRT  720
CPDKLASDEV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	91	KRKRRR
2	86	92	KRKRRRR
3	87	91	RKRRR
4	88	93	KRRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-85	FAR1 family protein