PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152119.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 486aa MW: 54516.7 Da PI: 8.8139

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152119.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	390	437	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+v q G g W+ I r + Rt+ ++k++w+++l XP_019152119.1 390 WTISEVRKLVDGVSQCGVGKWSQIKRIFFsssDYRTPVDLKDKWRNLL 437 9*************************9999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MEGRQDPSIS LQVEKELIQE PSYAEAETFE VPNDPLDAYG GYLLGVVQEA ECWSNILQMT 60 NPEFHGLPSR IDEGEMSVEG NCHKFPTSFT SGHIDYLEDV TSFFPGSISS NKKDEDMIFT 120 PALTSSGLVC MSTIKQSEEF NLGGQNGGHG TMYLGDSPKM NSSQTNTIDS SHTQRRVRKP 180 TRRYIDESSD LNTRYVKKRK EGSASASKNK CQSVKCNKKP KPESEAIESL SEDFTFNAIQ 240 VPFGPLVPEE CDKKVASDVV KVKSIEISRL GLKECDRKHA SNVKKVKLNQ LSSVDPKLCH 300 KKHSPNVKKV KMNYVSSFGS EISDKKQASL VKMVKSNHIS FDSEECCKRH APNVSKDSFE 360 EMALGVIEDD SAAITRSDGN CARRKHHRLW TISEVRKLVD GVSQCGVGKW SQIKRIFFSS 420 SDYRTPVDLK DKWRNLLKAS RLQNQSKKGD KGKQTFSWRP LPKSILNQVC ELANVHPYPR 480 NCKSKT

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MEGRQDPSIS LQVEKELIQE PSYAEAETFE VPNDPLDAYG GYLLGVVQEA ECWSNILQMT  60
NPEFHGLPSR IDEGEMSVEG NCHKFPTSFT SGHIDYLEDV TSFFPGSISS NKKDEDMIFT  120
PALTSSGLVC MSTIKQSEEF NLGGQNGGHG TMYLGDSPKM NSSQTNTIDS SHTQRRVRKP  180
TRRYIDESSD LNTRYVKKRK EGSASASKNK CQSVKCNKKP KPESEAIESL SEDFTFNAIQ  240
VPFGPLVPEE CDKKVASDVV KVKSIEISRL GLKECDRKHA SNVKKVKLNQ LSSVDPKLCH  300
KKHSPNVKKV KMNYVSSFGS EISDKKQASL VKMVKSNHIS FDSEECCKRH APNVSKDSFE  360
EMALGVIEDD SAAITRSDGN CARRKHHRLW TISEVRKLVD GVSQCGVGKW SQIKRIFFSS  420
SDYRTPVDLK DKWRNLLKAS RLQNQSKKGD KGKQTFSWRP LPKSILNQVC ELANVHPYPR  480
NCKSKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	5e-25	MYB_related family protein