PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152126.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 481aa MW: 54013.1 Da PI: 8.8188

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152126.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	385	432	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+v q G g W+ I r + Rt+ ++k++w+++l XP_019152126.1 385 WTISEVRKLVDGVSQCGVGKWSQIKRIFFsssDYRTPVDLKDKWRNLL 432 9*************************9999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MEGRQDPSIS LQVEKELIQE PSYAEAETFE VPNDPLDAYG VVQEAECWSN ILQMTNPEFH 60 GLPSRIDEGE MSVEGNCHKF PTSFTSGHID YLEDVTSFFP GSISSNKKDE DMIFTPALTS 120 SGLVCMSTIK QSEEFNLGGQ NGGHGTMYLG DSPKMNSSQT NTIDSSHTQR RVRKPTRRYI 180 DESSDLNTRY VKKRKEGSAS ASKNKCQSVK CNKKPKPESE AIESLSEDFT FNAIQVPFGP 240 LVPEECDKKV ASDVVKVKSI EISRLGLKEC DRKHASNVKK VKLNQLSSVD PKLCHKKHSP 300 NVKKVKMNYV SSFGSEISDK KQASLVKMVK SNHISFDSEE CCKRHAPNVS KDSFEEMALG 360 VIEDDSAAIT RSDGNCARRK HHRLWTISEV RKLVDGVSQC GVGKWSQIKR IFFSSSDYRT 420 PVDLKDKWRN LLKASRLQNQ SKKGDKGKQT FSWRPLPKSI LNQVCELANV HPYPRNCKSK 480 T

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MEGRQDPSIS LQVEKELIQE PSYAEAETFE VPNDPLDAYG VVQEAECWSN ILQMTNPEFH  60
GLPSRIDEGE MSVEGNCHKF PTSFTSGHID YLEDVTSFFP GSISSNKKDE DMIFTPALTS  120
SGLVCMSTIK QSEEFNLGGQ NGGHGTMYLG DSPKMNSSQT NTIDSSHTQR RVRKPTRRYI  180
DESSDLNTRY VKKRKEGSAS ASKNKCQSVK CNKKPKPESE AIESLSEDFT FNAIQVPFGP  240
LVPEECDKKV ASDVVKVKSI EISRLGLKEC DRKHASNVKK VKLNQLSSVD PKLCHKKHSP  300
NVKKVKMNYV SSFGSEISDK KQASLVKMVK SNHISFDSEE CCKRHAPNVS KDSFEEMALG  360
VIEDDSAAIT RSDGNCARRK HHRLWTISEV RKLVDGVSQC GVGKWSQIKR IFFSSSDYRT  420
PVDLKDKWRN LLKASRLQNQ SKKGDKGKQT FSWRPLPKSI LNQVCELANV HPYPRNCKSK  480
T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	4e-25	MYB_related family protein