PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152135.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 444aa MW: 49851.6 Da PI: 9.5529

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152135.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	348	395	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+v q G g W+ I r + Rt+ ++k++w+++l XP_019152135.1 348 WTISEVRKLVDGVSQCGVGKWSQIKRIFFsssDYRTPVDLKDKWRNLL 395 9*************************9999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MEGVVQEAEC WSNILQMTNP EFHGLPSRID EGEMSVEGNC HKFPTSFTSG HIDYLEDVTS 60 FFPGSISSNK KDEDMIFTPA LTSSGLVCMS TIKQSEEFNL GGQNGGHGTM YLGDSPKMNS 120 SQTNTIDSSH TQRRVRKPTR RYIDESSDLN TRYVKKRKEG SASASKNKCQ SVKCNKKPKP 180 ESEAIESLSE DFTFNAIQVP FGPLVPEECD KKVASDVVKV KSIEISRLGL KECDRKHASN 240 VKKVKLNQLS SVDPKLCHKK HSPNVKKVKM NYVSSFGSEI SDKKQASLVK MVKSNHISFD 300 SEECCKRHAP NVSKDSFEEM ALGVIEDDSA AITRSDGNCA RRKHHRLWTI SEVRKLVDGV 360 SQCGVGKWSQ IKRIFFSSSD YRTPVDLKDK WRNLLKASRL QNQSKKGDKG KQTFSWRPLP 420 KSILNQVCEL ANVHPYPRNC KSKT

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MEGVVQEAEC WSNILQMTNP EFHGLPSRID EGEMSVEGNC HKFPTSFTSG HIDYLEDVTS  60
FFPGSISSNK KDEDMIFTPA LTSSGLVCMS TIKQSEEFNL GGQNGGHGTM YLGDSPKMNS  120
SQTNTIDSSH TQRRVRKPTR RYIDESSDLN TRYVKKRKEG SASASKNKCQ SVKCNKKPKP  180
ESEAIESLSE DFTFNAIQVP FGPLVPEECD KKVASDVVKV KSIEISRLGL KECDRKHASN  240
VKKVKLNQLS SVDPKLCHKK HSPNVKKVKM NYVSSFGSEI SDKKQASLVK MVKSNHISFD  300
SEECCKRHAP NVSKDSFEEM ALGVIEDDSA AITRSDGNCA RRKHHRLWTI SEVRKLVDGV  360
SQCGVGKWSQ IKRIFFSSSD YRTPVDLKDK WRNLLKASRL QNQSKKGDKG KQTFSWRPLP  420
KSILNQVCEL ANVHPYPRNC KSKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	3e-25	MYB_related family protein