PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152142.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 428aa MW: 48033.5 Da PI: 9.8501

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152142.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	332	379	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+v q G g W+ I r + Rt+ ++k++w+++l XP_019152142.1 332 WTISEVRKLVDGVSQCGVGKWSQIKRIFFsssDYRTPVDLKDKWRNLL 379 9*************************9999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MTNPEFHGLP SRIDEGEMSV EGNCHKFPTS FTSGHIDYLE DVTSFFPGSI SSNKKDEDMI 60 FTPALTSSGL VCMSTIKQSE EFNLGGQNGG HGTMYLGDSP KMNSSQTNTI DSSHTQRRVR 120 KPTRRYIDES SDLNTRYVKK RKEGSASASK NKCQSVKCNK KPKPESEAIE SLSEDFTFNA 180 IQVPFGPLVP EECDKKVASD VVKVKSIEIS RLGLKECDRK HASNVKKVKL NQLSSVDPKL 240 CHKKHSPNVK KVKMNYVSSF GSEISDKKQA SLVKMVKSNH ISFDSEECCK RHAPNVSKDS 300 FEEMALGVIE DDSAAITRSD GNCARRKHHR LWTISEVRKL VDGVSQCGVG KWSQIKRIFF 360 SSSDYRTPVD LKDKWRNLLK ASRLQNQSKK GDKGKQTFSW RPLPKSILNQ VCELANVHPY 420 PRNCKSKT

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MTNPEFHGLP SRIDEGEMSV EGNCHKFPTS FTSGHIDYLE DVTSFFPGSI SSNKKDEDMI  60
FTPALTSSGL VCMSTIKQSE EFNLGGQNGG HGTMYLGDSP KMNSSQTNTI DSSHTQRRVR  120
KPTRRYIDES SDLNTRYVKK RKEGSASASK NKCQSVKCNK KPKPESEAIE SLSEDFTFNA  180
IQVPFGPLVP EECDKKVASD VVKVKSIEIS RLGLKECDRK HASNVKKVKL NQLSSVDPKL  240
CHKKHSPNVK KVKMNYVSSF GSEISDKKQA SLVKMVKSNH ISFDSEECCK RHAPNVSKDS  300
FEEMALGVIE DDSAAITRSD GNCARRKHHR LWTISEVRKL VDGVSQCGVG KWSQIKRIFF  360
SSSDYRTPVD LKDKWRNLLK ASRLQNQSKK GDKGKQTFSW RPLPKSILNQ VCELANVHPY  420
PRNCKSKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	3e-25	MYB_related family protein