PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152215.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 592aa MW: 66191.6 Da PI: 7.4685

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152215.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.2	9.8e-17	76	153	2	83
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ XP_019152215.1 76 VYNSYAYRLGFSVRKGHQRYKGSTNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEK 153 7******************99999***********99877....8999**********************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence
MEDGTEQTNS AVGDWHSIQG DLVIVFAIVP FVSEGIVDGS VSSYQVDVDV DGSSSIPVDQ 60 DLVGLVVSNA DEAFEVYNSY AYRLGFSVRK GHQRYKGSTN TIQMKKFCCS KAGYKANSGV 120 KAYSKIDTRT GCGAFVQFDV GDDGLWTVTK HEKDSGIALA DGIRFLKHQL GGSPLVGFTS 180 RDAYNSMAAD TVKRLDGTDS NSLIEIFRRR QSTETDFFFD FELDLDARLC SFFWKDGQMR 240 RDYEVFGDLL VHDTTYRTNK YDMICGPFVG MNHHYMNVMF GCGFLMNERI ESFVWLFKAF 300 SRSMGGKSPQ TIMTDQCAAM AVAISKVFPT SRHRLCIWHI ETEAEFQFYW TRLVTDYKCH 360 KNTWLEKLYD CREKWCPAFN KDYFSGGILS SQRSETTNHS ISRRLSKTAG LCDFYSSFVS 420 VISEWRSKEN GEDFRCAQGV PAMMMEHVKL LSHAREKISK ISCSQDSSVA RKLCDEAVDD 480 VKKKVEAEVG HVHIEDCGVS SSSGGVQNPS SRRLKGERNK RRSGVIEKKY SLARGRRSAA 540 NKAALSTKGA VQSLVLENIS KLAGDGYLVH PSSSSSNFVQ FSKGLDDNVC VD

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence

MEDGTEQTNS AVGDWHSIQG DLVIVFAIVP FVSEGIVDGS VSSYQVDVDV DGSSSIPVDQ  60
DLVGLVVSNA DEAFEVYNSY AYRLGFSVRK GHQRYKGSTN TIQMKKFCCS KAGYKANSGV  120
KAYSKIDTRT GCGAFVQFDV GDDGLWTVTK HEKDSGIALA DGIRFLKHQL GGSPLVGFTS  180
RDAYNSMAAD TVKRLDGTDS NSLIEIFRRR QSTETDFFFD FELDLDARLC SFFWKDGQMR  240
RDYEVFGDLL VHDTTYRTNK YDMICGPFVG MNHHYMNVMF GCGFLMNERI ESFVWLFKAF  300
SRSMGGKSPQ TIMTDQCAAM AVAISKVFPT SRHRLCIWHI ETEAEFQFYW TRLVTDYKCH  360
KNTWLEKLYD CREKWCPAFN KDYFSGGILS SQRSETTNHS ISRRLSKTAG LCDFYSSFVS  420
VISEWRSKEN GEDFRCAQGV PAMMMEHVKL LSHAREKISK ISCSQDSSVA RKLCDEAVDD  480
VKKKVEAEVG HVHIEDCGVS SSSGGVQNPS SRRLKGERNK RRSGVIEKKY SLARGRRSAA  540
NKAALSTKGA VQSLVLENIS KLAGDGYLVH PSSSSSNFVQ FSKGLDDNVC VD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-49	FAR1 family protein