PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019152220.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 202aa    MW: 21642.8 Da    PI: 6.7595
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019152220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.55.3e-3971081100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                     +C aCk+lrrkC+k+Cv+apyf ++q  +++fa+vhk+FGasn +k+l a+p ++r +a+ +l+yeA ar+rdPvyG+vg i++lqqq+ +l+ae
  XP_019152220.1   7 PCGACKFLRRKCVKGCVFAPYFESDQlgTAHFAAVHKVFGASNASKMLMAIPANRRLEAVVTLCYEALARVRDPVYGCVGQIFTLQQQVVNLQAE 101
                     7***********************99666****************************************************************** PP

          DUF260  94 lallkee 100
                     la+++++
  XP_019152220.1 102 LAYVQAR 108
                     ***9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MSGVGGPCGA CKFLRRKCVK GCVFAPYFES DQLGTAHFAA VHKVFGASNA SKMLMAIPAN  60
RRLEAVVTLC YEALARVRDP VYGCVGQIFT LQQQVVNLQA ELAYVQARLS TLQHLPLAAP  120
PPGSLPTGGA NVDLQSSCEA GHSSDVSLYV NPPPPPPPLS PGLDVTGLCD EWDEDVATSD  180
LHMLAWEFVS RHLPGVRFRP SQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.17e-66LBD family protein