PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019152252.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 818aa    MW: 88719.5 Da    PI: 6.0851
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019152252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.7e-21129184156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  XP_019152252.1 129 KKRYHRHTPQQIQELEALFKECPHPDEKQRSELSKRLCLETRQVKFWFQNRRTQMK 184
                     688999***********************************************999 PP
2START186.91.1e-583265491206
                     HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     ela++a++elvk a+ +ep+Wv+       e +n++e+l++f++  +     + +ea+r++g+v+ ++  lve+l+d + +W e+++    + +t
  XP_019152252.1 326 ELALAAMDELVKVAQTDEPLWVRGLeggrgEVLNQEEYLRSFSPCIGlrpsgFVSEASRETGMVIINSLALVETLMDCG-KWGEMFPcliaRTST 419
                     5899*********************9*****************9999********************************.*************** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     ++vis g      galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ +  ++ +R  +lpSg+++++++ng+skvtwveh
  XP_019152252.1 420 TDVISGGmggtrnGALQLMYAELQVLSPLVPiRKVNFLRFCKQHAEGVWAVVDVSIDAIRQSSAAPNAAR--RLPSGCVVQDMPNGYSKVTWVEH 512
                     ************************************************************9988888888..*********************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++++ +h+l+r l++ g+ +ga++w atlq+qce+
  XP_019152252.1 513 AEYDESEVHQLYRALIGAGMGFGAQRWIATLQQQCEC 549
                     ***********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    
MNFGGFLDNS SGGEGDVVGG GARIVADIPY NNNMASGAIA HQPSLVPHSL TKSMFNSPGL  60
SLGLKTGMEG QGEVARVPES YEANNSNTNN NSVGRRSREE EPESRSGSDN FEGASGDDQD  120
AADDKPPRKK RYHRHTPQQI QELEALFKEC PHPDEKQRSE LSKRLCLETR QVKFWFQNRR  180
TQMKTQLERH ENSILRQEND KLRAENMSIR EAMRNPICSN CGGPAMIGEI SLEEQHLRIE  240
NVRLKDELDR VCALAGKFLG RPVSSLPNIN SSLELGVGSN GFGGLTVVPS IAPPPPPPPD  300
YGVALPTRQG SGVGIERSLE RSMYLELALA AMDELVKVAQ TDEPLWVRGL EGGRGEVLNQ  360
EEYLRSFSPC IGLRPSGFVS EASRETGMVI INSLALVETL MDCGKWGEMF PCLIARTSTT  420
DVISGGMGGT RNGALQLMYA ELQVLSPLVP IRKVNFLRFC KQHAEGVWAV VDVSIDAIRQ  480
SSAAPNAARR LPSGCVVQDM PNGYSKVTWV EHAEYDESEV HQLYRALIGA GMGFGAQRWI  540
ATLQQQCECL AILMSSALPT RDHTAISPSG RRSMLKLAQR MTNNFCAGVC ASSVHQWNKL  600
CAGNVDEDVR VMTRKSVDDP GEPSGIVLSA ATSVWLPVSP QRLFDFLRDE RLRSEWDILS  660
NGGPMHEMAH IAKGQDHGNC VSLLRASAMN SNQSSMLILQ ETCINAAGSL VVYAPVDIPA  720
MHVVMNGGDS AYVALLPSGF AIVPDGPGSR GPTSGTNGPC SNGDPYQQRV SGSLLTVAFQ  780
ILVNSLPTAK LTVESVETVN NLISCTIQKI KAALHCES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein