PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152309.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 304aa MW: 32890.9 Da PI: 6.5906

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152309.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.2e-38	33	89	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s XP_019152309.1 33 ALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRS 89 689***************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MQDIHSIGGG GGRLFGGGAD RRLRQNQHHN LPALKCPRCD SLNTKFCYYN NYNLSQPRHF 60 CKSCRRYWTK GGVLRNVPVG GGCRKSKRSK PKSTASASAS ASTPADGSQE CKSNSHSSSE 120 SSSLTGTGTT AAEVASTSTA TNMASNLVNY QDSSSAAAFF IPPSSSPRFD QPLLDHSTND 180 HIFQDIGSFT NMITPSNEPS LLGFADISPT FQIQQSQPGQ VVGDHNADAH WPQPEKIADQ 240 NFNTPGFLDQ TSQIDFPSLN QQQSRETNAG LSPLDWQPAG GGDQELFDLP GAVDQEYWNQ 300 TQWG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	18	GGGGRLFGGG
2	10	19	GGGGRLFGGG
3	11	20	GGGGRLFGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	1e-31	Dof family protein