PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152341.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 237aa MW: 26345.2 Da PI: 8.4802

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152341.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.5e-17	35	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v+++G ++W+ ++++ gR++k+c++rw + XP_019152341.1 35 KGPWSAEEDKILTRLVERYGARNWSMMSKYIK-GRSGKSCRLRWCNQ 80 79***************************9.*********985 PP
2	Myb_DNA-binding	53.4	6e-17	89	131	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a+ ++G++ W+tIar ++ gRt++ +k++w++ XP_019152341.1 89 PFSAAEDEAILAAHSRYGNR-WATIARLLP-GRTDNAVKNHWNST 131 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MGAFHRWSST SSTSSDSCSS GSSFSAGGNQ AEKIKGPWSA EEDKILTRLV ERYGARNWSM 60 MSKYIKGRSG KSCRLRWCNQ LSPTVEHRPF SAAEDEAILA AHSRYGNRWA TIARLLPGRT 120 DNAVKNHWNS TLKRRHQKQP QPSDLPMTAA DVNVNVNSSG STESKTEKSS ETDTWDDEFD 180 PMTALSLAPP GMGRHSPPER PAESLPVVFW DAMKDVIARE VRDYITSSFS EASTSYH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-55	MYB family protein