PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152416.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HSF

Protein Properties

Length: 350aa MW: 39148.2 Da PI: 7.5184

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.3	3.7e-36	25	117	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv ++ weF+++ Fk+g+k+ll++ XP_019152416.1 25 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANEFFKRGEKHLLCE 110 9***************************************************************99.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+k++ XP_019152416.1 111 IHRRKTA 117 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANEFF KRGEKHLLCE IHRRKTAQPQ 120 VAVDHLHHHH PMNEPSFFSA YNPGRLSVSP PDSDEQLTAN NNAWCDSPSF ASSTVISAGN 180 SGGGGGYNNG SVAALSEDNV RLRRSNNMLM SELAHMRKLY NDIIYFVQNH VKPVTPSSNS 240 YPSPLITQKP LSQLVTYPHP HPPTKHQPVF NLSSPTKTSQ SSVTLVEDPP AADLCRTKLF 300 GFPLQSKKRL HPDQYSPPSS MEAAAAAAHK ARVLVLEKDD LALHLMPPSC

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANEFF KRGEKHLLCE IHRRKTAQPQ  120
VAVDHLHHHH PMNEPSFFSA YNPGRLSVSP PDSDEQLTAN NNAWCDSPSF ASSTVISAGN  180
SGGGGGYNNG SVAALSEDNV RLRRSNNMLM SELAHMRKLY NDIIYFVQNH VKPVTPSSNS  240
YPSPLITQKP LSQLVTYPHP HPPTKHQPVF NLSSPTKTSQ SSVTLVEDPP AADLCRTKLF  300
GFPLQSKKRL HPDQYSPPSS MEAAAAAAHK ARVLVLEKDD LALHLMPPSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-108	HSF family protein