PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152424.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 736aa MW: 83721 Da PI: 8.1524

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152424.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.8	1.8e-18	50	151	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +fY +YA vGF+vr + kk r ge++ r++ C++eg+++ + + ++++r+r+++r+gCka+++ k++++ + v ++e XP_019152424.1 50 EFYIKYAALVGFDVRCGSLKKD-RGGEVILRHLLCNREGYKSVSGGTpnagghgvyddscPVTQKRRRVSNRVGCKARIVFKNDQTRGYWVFSFE 143 6**************99998.8999************99999*******9999999***************99999* PP FAR1 83 leHnHela 90 + H+H l+ XP_019152424.1 144 ERHTHVLC 151 ***998 PP

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence
MIMLVTLVVW GEGCRLQISP GSSKYWWPQC DDGSKPVIGQ TFKTLTEGEE FYIKYAALVG 60 FDVRCGSLKK DRGGEVILRH LLCNREGYKS VSGGTPNAGG HGVYDDSCPV TQKRRRVSNR 120 VGCKARIVFK NDQTRGYWVF SFEERHTHVL CTPLSRQFMK VNRKLDFGHQ AFMANCAKAN 180 VGTSQGVRLL SEFVGGYENV GATSVDFQNS KRDLRAYIEG CDAQYLLDKL SRKNEKCAAF 240 YYKHDIDESD QLRRVFWADP VAHRNHTVFG DIVSFDATYS TNRYKMVFVP FTGMDNHKRC 300 VTFGAALITK EDVASYVWVL ETYKEAMGDA PSCFVTDQDP AMRIALAEVY PTTRHRFCMW 360 HIMMKVGEKV GPELSKDGVF RGKLNAIVWD EIQQPDVFET RWQALLGEYG LLDHNWFTQL 420 WEARRYWIPA YFKDMILSGL VRTTSRSEGE NSFFGRYLTH TSSLVEFYSH FESAVDAQRQ 480 IHTMLNAVCE GHFAPTQTDL KMERHALAVY TVTIFHEVQA EIYAGCYSCG VVSVDGAGDV 540 INYGIKESEN QQFQVHYNSS DSSATCTCSL FQRLGWLCRH IFLVFKNNHV DNIPSRYIVD 600 RWTRKVCLRA EFQYDGLTIQ SNVNDDESKT QENKMWAEIF ACVGLAITSS ERVERLTQVI 660 HQLKDSFVGE TNGPVQHKKN NRMIQSYCGS EPVLAVTVKP PNVAKNKGSG KRFKGKREKA 720 IEQSLKGTWN ELGPGT

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence

MIMLVTLVVW GEGCRLQISP GSSKYWWPQC DDGSKPVIGQ TFKTLTEGEE FYIKYAALVG  60
FDVRCGSLKK DRGGEVILRH LLCNREGYKS VSGGTPNAGG HGVYDDSCPV TQKRRRVSNR  120
VGCKARIVFK NDQTRGYWVF SFEERHTHVL CTPLSRQFMK VNRKLDFGHQ AFMANCAKAN  180
VGTSQGVRLL SEFVGGYENV GATSVDFQNS KRDLRAYIEG CDAQYLLDKL SRKNEKCAAF  240
YYKHDIDESD QLRRVFWADP VAHRNHTVFG DIVSFDATYS TNRYKMVFVP FTGMDNHKRC  300
VTFGAALITK EDVASYVWVL ETYKEAMGDA PSCFVTDQDP AMRIALAEVY PTTRHRFCMW  360
HIMMKVGEKV GPELSKDGVF RGKLNAIVWD EIQQPDVFET RWQALLGEYG LLDHNWFTQL  420
WEARRYWIPA YFKDMILSGL VRTTSRSEGE NSFFGRYLTH TSSLVEFYSH FESAVDAQRQ  480
IHTMLNAVCE GHFAPTQTDL KMERHALAVY TVTIFHEVQA EIYAGCYSCG VVSVDGAGDV  540
INYGIKESEN QQFQVHYNSS DSSATCTCSL FQRLGWLCRH IFLVFKNNHV DNIPSRYIVD  600
RWTRKVCLRA EFQYDGLTIQ SNVNDDESKT QENKMWAEIF ACVGLAITSS ERVERLTQVI  660
HQLKDSFVGE TNGPVQHKKN NRMIQSYCGS EPVLAVTVKP PNVAKNKGSG KRFKGKREKA  720
IEQSLKGTWN ELGPGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	117	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-90	FAR1 family protein