PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019152482.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 226aa    MW: 24465.5 Da    PI: 8.3942
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019152482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601452.2e-45101091100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC+++Cv+apyfp +qp+kfa vhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+
  XP_019152482.1  10 PCAACKFLRRKCQPECVFAPYFPPDQPQKFASVHKVFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLS 104
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                      +k+e
  XP_019152482.1 105 CAKSE 109
                     99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MASSSSSNSP CAACKFLRRK CQPECVFAPY FPPDQPQKFA SVHKVFGASN VTKLLNELQP  60
HQREDAVNSL AYEADMRLRD PVYGCVGVIS LLQHQLRQLQ MDLSCAKSEL SKYQSHLGVG  120
STTHNLIAAA AAAAAAHHHH HQQQNNLGFN LMGGGAGGGG SAGAREHHQH QFFPRDQQQP  180
YLINNYEPSS LLAMNMNVSA SIGPLSQFQP PRAAGADGRR TPVEPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.35e-78LBD family protein