PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152554.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 201aa MW: 23059 Da PI: 10.6336

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.6e-09	21	71	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54 + +Er+RR +++ +L +l+P+ + +++ ls + L +Av YIk L XP_019152554.1 21 KTVERKRRIHMKYLCGKLVSLIPPhHFyPSKQESLSQQDQLDQAVTYIKTL 71 679*******************7775555556*************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MEEKMRMISS RGGVSEKPDR KTVERKRRIH MKYLCGKLVS LIPPHHFYPS KQESLSQQDQ 60 LDQAVTYIKT LRERVEKLEK MKKKMSWGKE EESSEKKKKK KKKKKSATTA AAACTLLKSA 120 VIEVRDLEST LEVVLMSATN KPNFMLHQLI RIVEEEGAQL QTATFSTAGD KVFHTLHAQV 180 KVARLGMETS RVYGRLKQLI T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	104	KKKMSWGKEEESSEKKKKKKKKK
2	96	102	KKKKKKK
3	96	104	KKKKKKKKK
4	96	105	KKKKKKKKKK
5	97	103	KKKKKKK
6	97	105	KKKKKKKKK
7	98	104	KKKKKKK
8	99	105	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	3e-16	bHLH family protein