PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019152555.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 200aa    MW: 22930.9 Da    PI: 10.6336
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019152555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.3e-092170654
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    + +Er+RR +++    +L +l+P+  + ++++ ls  + L +Av YIk L
  XP_019152555.1 21 KTVERKRRIHMKYLCGKLVSLIPPhHFYPSKESLSQQDQLDQAVTYIKTL 70
                    679*********************888888888***************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MEEKMRMISS RGGVSEKPDR KTVERKRRIH MKYLCGKLVS LIPPHHFYPS KESLSQQDQL  60
DQAVTYIKTL RERVEKLEKM KKKMSWGKEE ESSEKKKKKK KKKKSATTAA AACTLLKSAV  120
IEVRDLESTL EVVLMSATNK PNFMLHQLIR IVEEEGAQLQ TATFSTAGDK VFHTLHAQVK  180
VARLGMETSR VYGRLKQLIT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
181103KKKMSWGKEEESSEKKKKKKKKK
295101KKKKKKK
395103KKKKKKKKK
495104KKKKKKKKKK
596102KKKKKKK
696104KKKKKKKKK
797103KKKKKKK
898104KKKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-18bHLH family protein