PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019152597.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 347aa    MW: 38676.9 Da    PI: 4.4858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019152597.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11180223654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  XP_019152597.1 180 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 223
                     589*********************66......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MDYYSGNGFL EELLALRNES WEGNSIAMGM GMEMMNDELF CNYNGWPSSD YCTALHSFGE  60
SAAMPVPPPC TTASGGAAFC FDEFLSSLPF DQSQSYLHPE FYIPPVPFGD ELSLPQLAES  120
SSTKLESLPF PGSQEDLSAI LEPVQSSSVE TPSAFNIGFC GPEKKANKSK KLHGQPSKNL  180
MAERRRRKRL NDRLSMLRSV VPKISKMDRT SILGDTIDYM KELLERINNL QEEMELGTND  240
LSLMSIFKNE KPNEMVVRNS PKFDVESRGE MDTRIEICCG AKPGLLLSTV ATLENLGLEI  300
QQCVISCFND FAMQASCTKE LEQREVLSSE DIRQALYRNA GYGGKCF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183190ERRRRKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-85bHLH family protein