PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019152666.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25504.4 Da    PI: 7.4564
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019152666.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.2e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr g++KKAeEL vLCda+va+iifs tgkl+e++s
  XP_019152666.1  9 KKIDNITARQVTFSKRRRGLFKKAEELAVLCDADVALIIFSATGKLFEFAS 59
                    68***********************************************86 PP
2K-box51.35.2e-18931712199
           K-box  21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + +L ke+    +e+R+++Ge+L+ Lsl+eLq+Le++Le++l+++ ++K e ++++i +lq+k  el +enk+L++k++
  XP_019152666.1  93 HMRLSKEVADKTHELRQMKGEELQGLSLEELQKLEKKLENGLTRVLETKGERVVTEIATLQRKGAELMNENKQLKQKMA 171
                     56888888888999**************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELAVLCD ADVALIIFSA TGKLFEFASS  60
NMKDILGKYK LHSSNLDQVN QPSLELQLEN SLHMRLSKEV ADKTHELRQM KGEELQGLSL  120
EELQKLEKKL ENGLTRVLET KGERVVTEIA TLQRKGAELM NENKQLKQKM ARINGEKFPV  180
IADVEAGLIP EEGHSSESIT TNVCSCNSGP LPEDDCSDTS LKLGLPIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-80MIKC_MADS family protein