PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152837.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 250aa MW: 28280.7 Da PI: 6.7847

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.9	7.8e-18	37	113	15	97
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +l +p kfa++ +k ++l+ +sg W+v l + +++ +l+ GWkeFv+++ L+e+D++vFk++g+ +f v++f XP_019152837.1 37 QLAIPQKFADNLREK--LADSVSLKGPSGAIWNVDL--EAEGDKLYLKYGWKEFVEEHSLRENDVLVFKYNGNLQF--DVTMF 113 578****666655..5557***********..******************************997666..66665 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGDSDCGGCK KREENIYWSH FQTVQFFQIL CGHYDLQLAI PQKFADNLRE KLADSVSLKG 60 PSGAIWNVDL EAEGDKLYLK YGWKEFVEEH SLRENDVLVF KYNGNLQFDV TMFDGLTLCE 120 KEASYFIRHC EHRELTIRAI PISATPNSYH ETAANESSSH EEFEVTARKN PGNGFASINQ 180 STQAYGRPRK RPKSRNGGPS HVYPLQLKSN RRPVTEDEKG KAIQAASAAA VGDSFTVVMQ 240 ECHVYKGFFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	194	PRKRPKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	6e-41	B3 family protein