PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152881.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 382aa MW: 41177.9 Da PI: 8.1837

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	82.5	3.7e-26	150	193	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e XP_019152881.1 150 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 193 79***************************************987 PP
2	QLQ	46.2	1.3e-16	79	114	1	36
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+F+ Q+q+L+ Q+l++++++a++PvPpeLl ++ XP_019152881.1 79 SYFSLGQWQELELQALIFRHMIAGAPVPPELLHLVK 114 789****************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MDFDLKQWRN QEESEAKVPR LVLDLHSTTT TASHGGGGGG SSSSALPLFV SEPPTSKLSA 60 FSSDSTPTAT TKFPRMGGSY FSLGQWQELE LQALIFRHMI AGAPVPPELL HLVKKSLFNS 120 APYYFPHPLH QYPHYHPASA PWYWGRAAMD PEPGRCRRTD GKKWRCSRDV VAGQKYCERH 180 MHRGRNRSRK PVEIPTPTPP TAAGGPTADA QPLSAVPGRD APPHFTLSAA TAPPSSSIDL 240 FHLSQRHHGE PIMESNGPLE AQKDGPAGGQ TLRHFFDDWP RPLEENESSS AVASATNLSI 300 SIPGNASSDF SLKLATGPPL GGNMERTTAA WGTSHHQVQV GSAVGGPLAE ALRSSTSNSS 360 PTSVLHQLQR NSTTSETSFI TS

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MDFDLKQWRN QEESEAKVPR LVLDLHSTTT TASHGGGGGG SSSSALPLFV SEPPTSKLSA  60
FSSDSTPTAT TKFPRMGGSY FSLGQWQELE LQALIFRHMI AGAPVPPELL HLVKKSLFNS  120
APYYFPHPLH QYPHYHPASA PWYWGRAAMD PEPGRCRRTD GKKWRCSRDV VAGQKYCERH  180
MHRGRNRSRK PVEIPTPTPP TAAGGPTADA QPLSAVPGRD APPHFTLSAA TAPPSSSIDL  240
FHLSQRHHGE PIMESNGPLE AQKDGPAGGQ TLRHFFDDWP RPLEENESSS AVASATNLSI  300
SIPGNASSDF SLKLATGPPL GGNMERTTAA WGTSHHQVQV GSAVGGPLAE ALRSSTSNSS  360
PTSVLHQLQR NSTTSETSFI TS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-63	GRF family protein