PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019153096.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25557.3 Da    PI: 9.1216
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019153096.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.89.3e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gkl+e++s
  XP_019153096.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLFEFCS 59
                    79***********************************************96 PP
2K-box94.12.3e-31801719100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +++++++  ++e+ kLk+++e Lqr+qR+llGedL++Ls+k+L +Le+q+e+sl++iRs+K++ +++q+ elq+ke +l ++n+ L++klee
  XP_019153096.1  80 ANQSNTQDNYHEYLKLKAKVELLQRSQRNLLGEDLGPLSIKDLGHLEHQVESSLTQIRSTKTQSMMNQLAELQQKELALVDANNLLKMKLEE 171
                     578899***********************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLFEFCSS  60
SSMMKTLEKY HHCNYASLEA NQSNTQDNYH EYLKLKAKVE LLQRSQRNLL GEDLGPLSIK  120
DLGHLEHQVE SSLTQIRSTK TQSMMNQLAE LQQKELALVD ANNLLKMKLE ERTAATIPQQ  180
PALGFFQPVG VNSTTSQLGF HHVGSGEINA EVSSAHNING FIPGWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.12e-81MIKC_MADS family protein