PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153154.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 310aa MW: 34377.9 Da PI: 7.6156

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.7	6.3e-19	13	58	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G+++W++I + ++ gR++k+c++rw + XP_019153154.1 13 KGPWSPEEDEMLERLVEKYGPRNWSLIGNSIP-GRSGKSCRLRWCNQ 58 79****************************.*********985 PP
2	Myb_DNA-binding	56	9e-18	67	109	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ XP_019153154.1 67 PFTAEEDETIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 109 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MEEKKEAAAD RIKGPWSPEE DEMLERLVEK YGPRNWSLIG NSIPGRSGKS CRLRWCNQLS 60 PEVEHRPFTA EEDETIIRAH AKFGNKWATI ARLLSGRTDN AIKNHWNSTL KRKCGSVSSE 120 NLSFEPPPPR GLPLKRSSSD GLGVNMSGLH LSPSDSDFSD IYNPIARTGG GKLPLPLPPH 180 FPTMETPPSL SSDPVTSLSL SLPGSNEAPP LINRRNHLLP IPQLPQVSPP AKVYLPPQPP 240 QSFQFAAPPP PQTAEKPFFS PEFLAELQEM IRKEVRNYMS GVEHNGLCTQ ADEAIQNAAA 300 QRIGIWHRQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-79	MYB family protein