PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153155.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 300aa MW: 33355.7 Da PI: 7.5844

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153155.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.8	6e-19	13	58	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G+++W++I + ++ gR++k+c++rw + XP_019153155.1 13 KGPWSPEEDEMLERLVEKYGPRNWSLIGNSIP-GRSGKSCRLRWCNQ 58 79****************************.*********985 PP
2	Myb_DNA-binding	56.1	8.6e-18	67	109	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ XP_019153155.1 67 PFTAEEDETIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 109 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MEEKKEAAAD RIKGPWSPEE DEMLERLVEK YGPRNWSLIG NSIPGRSGKS CRLRWCNQLS 60 PEVEHRPFTA EEDETIIRAH AKFGNKWATI ARLLSGRTDN AIKNHWNSTL KRKCGSVSSE 120 NLSFEPPPPR GLPLKRSSSD GSPSDSDFSD IYNPIARTGG GKLPLPLPPH FPTMETPPSL 180 SSDPVTSLSL SLPGSNEAPP LINRRNHLLP IPQLPQVSPP AKVYLPPQPP QSFQFAAPPP 240 PQTAEKPFFS PEFLAELQEM IRKEVRNYMS GVEHNGLCTQ ADEAIQNAAA QRIGIWHRQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-71	MYB family protein