PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019153160.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 384aa    MW: 42475.9 Da    PI: 6.6298
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019153160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.3e-13106147346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++++E+el++++++  G++ W+ Ia+ ++ gRt++++k+ w++
   XP_019153160.1 106 NFSPQEEELIIKLHATIGSR-WTIIAQQLP-GRTDNDVKNLWNT 147
                      89******************.*********.**********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    
MRFNLFESKQ KMGRPHGSCT EKLPSRRGFW DDYDQEDAAQ KSVGYVSRIK TGNNWTAAIS  60
KKTAASGMGG GRVERSSRAR WSNNNRSSSR HDVDHHHHHH HQEQDNFSPQ EEELIIKLHA  120
TIGSRWTIIA QQLPGRTDND VKNLWNTKLK KKLSAMGIDP VTHKPFSQIL ADYGNIGGFP  180
TSTSRPPQFG TLNRALKTTI IMSSKSQKLS ADQPSSRAAA DCCFLHTTTN KIKSSEEDDS  240
NQYMDLLSEL QAIKSITEST NYSSAAAPDS TIVVSPPSSL SSLTSPLAAA AAAQEKAGFS  300
WCDDFLLEDA FLPLNNVQQS SDWEPNHNNN TSPQDIIKIS SSPSSSNSNL EAASSSSFVE  360
AMLSREDHDM FLDFPGLSEE PFYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-23MYB family protein