PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019153161.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 382aa    MW: 42317.7 Da    PI: 6.6298
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019153161.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.3e-13104145346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++++E+el++++++  G++ W+ Ia+ ++ gRt++++k+ w++
   XP_019153161.1 104 NFSPQEEELIIKLHATIGSR-WTIIAQQLP-GRTDNDVKNLWNT 145
                      89******************.*********.**********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    
MRFNLFESKQ KMGRPHGSCT EKLPSRRGFW DDYDQEDAAQ KSVGYVSRIK TGNNWTAAIS  60
KKTAGMGGGR VERSSRARWS NNNRSSSRHD VDHHHHHHHQ EQDNFSPQEE ELIIKLHATI  120
GSRWTIIAQQ LPGRTDNDVK NLWNTKLKKK LSAMGIDPVT HKPFSQILAD YGNIGGFPTS  180
TSRPPQFGTL NRALKTTIIM SSKSQKLSAD QPSSRAAADC CFLHTTTNKI KSSEEDDSNQ  240
YMDLLSELQA IKSITESTNY SSAAAPDSTI VVSPPSSLSS LTSPLAAAAA AQEKAGFSWC  300
DDFLLEDAFL PLNNVQQSSD WEPNHNNNTS PQDIIKISSS PSSSNSNLEA ASSSSFVEAM  360
LSREDHDMFL DFPGLSEEPF YY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.18e-24MYB family protein